Metagenome / Metatranscriptome Family F065282

Overview

Basic Information

• Family ID: F065282
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 127
• Average Sequence Length: 53 residues
• Representative Sequence: MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEEENG
• Number of Associated Samples: 12
• Number of Associated Scaffolds: 127

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 77.17 %
• % of genes near scaffold ends (potentially truncated): 10.24 %
• % of genes from short scaffolds (< 2000 bps): 82.68 %
• Associated GOLD sequencing projects: 12
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (54.331 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (93.701 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (92.913 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 22.78%
  β-sheet: 21.52%
  Coil/Unstructured: 55.70%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.95.2.2: Intein endonuclease	d1jvaa3	1jva	0.73331
c.66.1.0: automated matches	d3e05a_	3e05	0.7247
c.66.1.13: tRNA(1-methyladenosine) methyltransferase-like	d1i9ga_	1i9g	0.71753
d.90.1.0: automated matches	d5j6ca_	5j6c	0.70491
d.68.7.1: R3H domain	d2lrra_	2lrr	0.6938

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF11753	DUF3310	32.28
PF03819	MazG	5.51
PF01555	N6_N4_Mtase	3.15
PF02086	MethyltransfD12	1.57
PF05119	Terminase_4	0.79
PF14354	Lar_restr_allev	0.79
PF07374	DUF1492	0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	3.15
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	3.15
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	3.15
COG0338	DNA-adenine methylase	Replication, recombination and repair [L]	1.57
COG3392	Adenine-specific DNA methylase	Replication, recombination and repair [L]	1.57
COG3747	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.79

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
All Organisms	root	All Organisms	45.67 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Viruses	superkingdom	All Organisms → Viruses	24.41 %
cellular organisms	root	All Organisms → cellular organisms	21.26 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.57 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.79 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	14.17 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.57 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.79 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.62 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	14.17 %
Methanomada group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group	1.57 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.79 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.62 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	13.39 %
Methanobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria	1.57 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.79 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.62 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13.39 %
Methanobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales	1.57 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.79 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.62 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	8.66 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2.36 %
Methanobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	1.57 %
Siphoviridae sp. ctkyH28	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctkyH28	0.79 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.62 %
Butyricicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	8.66 %
Methanobrevibacter	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	1.57 %
Bilifractor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor	0.79 %
Cellulosilyticum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Cellulosilyticum	0.79 %
unclassified Lachnospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae	0.79 %
Siphoviridae sp. ctkyH28	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctkyH28	0.79 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.62 %
Butyricicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	8.66 %
unclassified Methanobrevibacter	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter	1.57 %
unclassified Cellulosilyticum	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Cellulosilyticum → unclassified Cellulosilyticum	0.79 %
Bilifractor porci	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor → Bilifractor porci	0.79 %
Lachnospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	0.79 %
Siphoviridae sp. ctkyH28	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctkyH28	0.79 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.62 %
Butyricicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	8.66 %
Methanobrevibacter sp.	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1.57 %
Cellulosilyticum sp. WCF-2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Cellulosilyticum → unclassified Cellulosilyticum → Cellulosilyticum sp. WCF-2	0.79 %
Bilifractor porci	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor → Bilifractor porci	0.79 %
Lachnospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	0.79 %
Siphoviridae sp. ctkyH28	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctkyH28	0.79 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300014047|Ga0120381_1005883	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	3364
3300014057|Ga0120384_1296985	Not Available	530
3300021256|Ga0223826_10009237	All Organisms → cellular organisms → Bacteria	11027
3300021256|Ga0223826_10020390	Not Available	6640
3300021256|Ga0223826_10923088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	617
3300021399|Ga0224415_10011180	Not Available	8727
3300021426|Ga0224482_10092242	All Organisms → cellular organisms → Bacteria	2687
3300021431|Ga0224423_10006346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14395
3300028833|Ga0247610_11090634	Not Available	800
3300031760|Ga0326513_10051583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3199
3300031760|Ga0326513_10096336	Not Available	2418
3300031760|Ga0326513_10101023	All Organisms → Viruses → Predicted Viral	2366
3300031760|Ga0326513_10109121	All Organisms → Viruses → Predicted Viral	2283
3300031760|Ga0326513_10218717	All Organisms → Viruses → Predicted Viral	1656
3300031760|Ga0326513_10314215	Not Available	1388
3300031760|Ga0326513_10364752	All Organisms → Viruses → Predicted Viral	1288
3300031760|Ga0326513_10391737	Not Available	1242
3300031760|Ga0326513_10397893	All Organisms → Viruses → Predicted Viral	1232
3300031760|Ga0326513_10401672	Not Available	1226
3300031760|Ga0326513_10431127	All Organisms → Viruses → Predicted Viral	1182
3300031760|Ga0326513_10470827	All Organisms → Viruses → Predicted Viral	1129
3300031760|Ga0326513_10571379	Not Available	1018
3300031760|Ga0326513_10603305	Not Available	988
3300031760|Ga0326513_10640849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	956
3300031760|Ga0326513_10699735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	910
3300031760|Ga0326513_10846410	Not Available	816
3300031760|Ga0326513_10846935	Not Available	816
3300031760|Ga0326513_10868008	Not Available	804
3300031760|Ga0326513_10988513	All Organisms → cellular organisms → Bacteria	744
3300031760|Ga0326513_11083471	Not Available	704
3300031760|Ga0326513_11129868	Not Available	687
3300031760|Ga0326513_11204958	Not Available	660
3300031760|Ga0326513_11223196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	654
3300031760|Ga0326513_11291091	Not Available	633
3300031760|Ga0326513_11340081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	618
3300031760|Ga0326513_11400422	Not Available	601
3300031760|Ga0326513_11485474	Not Available	579
3300031760|Ga0326513_11671828	Not Available	536
3300031760|Ga0326513_11797080	Not Available	512
3300031853|Ga0326514_10022662	All Organisms → Viruses → Predicted Viral	4389
3300031853|Ga0326514_10042205	All Organisms → Viruses → Predicted Viral	3367
3300031853|Ga0326514_10053054	All Organisms → Viruses → Predicted Viral	3054
3300031853|Ga0326514_10055401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor → Bilifractor porci	2998
3300031853|Ga0326514_10107773	All Organisms → Viruses → Predicted Viral	2246
3300031853|Ga0326514_10247909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	1536
3300031853|Ga0326514_10289109	All Organisms → Viruses → Predicted Viral	1426
3300031853|Ga0326514_10295729	All Organisms → Viruses → Predicted Viral	1410
3300031853|Ga0326514_10344605	Not Available	1307
3300031853|Ga0326514_10482745	Not Available	1098
3300031853|Ga0326514_10585055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	989
3300031853|Ga0326514_10866249	Not Available	789
3300031853|Ga0326514_11099790	Not Available	682
3300031853|Ga0326514_11214315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	641
3300031853|Ga0326514_11404535	Not Available	584
3300031853|Ga0326514_11451639	Not Available	572
3300031853|Ga0326514_11613082	Not Available	533
3300031867|Ga0326511_10028376	All Organisms → Viruses → Predicted Viral	4638
3300031867|Ga0326511_10100488	All Organisms → Viruses → Predicted Viral	2623
3300031867|Ga0326511_10129985	Not Available	2333
3300031867|Ga0326511_10137053	All Organisms → cellular organisms → Bacteria	2276
3300031867|Ga0326511_10192693	All Organisms → cellular organisms → Bacteria	1943
3300031867|Ga0326511_10196042	All Organisms → Viruses → Predicted Viral	1927
3300031867|Ga0326511_10216655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	1838
3300031867|Ga0326511_10220375	Not Available	1823
3300031867|Ga0326511_10225792	All Organisms → Viruses → Predicted Viral	1802
3300031867|Ga0326511_10240365	All Organisms → Viruses → Predicted Viral	1749
3300031867|Ga0326511_10244740	All Organisms → Viruses → Predicted Viral	1734
3300031867|Ga0326511_10256443	Not Available	1695
3300031867|Ga0326511_10259258	Not Available	1686
3300031867|Ga0326511_10286749	All Organisms → cellular organisms → Bacteria	1606
3300031867|Ga0326511_10313061	Not Available	1538
3300031867|Ga0326511_10368692	All Organisms → Viruses → Predicted Viral	1416
3300031867|Ga0326511_10438583	Not Available	1295
3300031867|Ga0326511_10627009	All Organisms → Viruses → Predicted Viral	1069
3300031867|Ga0326511_10631301	Not Available	1065
3300031867|Ga0326511_10655540	Not Available	1043
3300031867|Ga0326511_10681765	Not Available	1020
3300031867|Ga0326511_10726393	All Organisms → cellular organisms → Bacteria	984
3300031867|Ga0326511_10770695	Not Available	951
3300031867|Ga0326511_10775547	Not Available	948
3300031867|Ga0326511_10792200	Not Available	936
3300031867|Ga0326511_10881930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	879
3300031867|Ga0326511_11000013	Not Available	815
3300031867|Ga0326511_11065122	Not Available	784
3300031867|Ga0326511_11087378	Not Available	774
3300031867|Ga0326511_11138616	Not Available	752
3300031867|Ga0326511_11164036	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	742
3300031867|Ga0326511_11224495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Cellulosilyticum → unclassified Cellulosilyticum → Cellulosilyticum sp. WCF-2	719
3300031867|Ga0326511_11259415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	706
3300031867|Ga0326511_11282259	Not Available	698
3300031867|Ga0326511_11376301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	667
3300031867|Ga0326511_11515166	Not Available	627
3300031867|Ga0326511_11529629	Not Available	623
3300031867|Ga0326511_11627346	Not Available	598
3300031867|Ga0326511_11659873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus	590
3300031867|Ga0326511_11783021	Not Available	562
3300031867|Ga0326511_11871319	Not Available	544
3300031867|Ga0326511_11901477	Not Available	538
3300031867|Ga0326511_12005382	Not Available	519
3300031899|Ga0326507_1338237	Not Available	536
3300032038|Ga0326512_10067263	All Organisms → Viruses → Predicted Viral	2765
3300032038|Ga0326512_10085364	Not Available	2464
3300032038|Ga0326512_10101172	All Organisms → Viruses → Predicted Viral	2267
3300032038|Ga0326512_10143892	All Organisms → Viruses → Predicted Viral	1903
3300032038|Ga0326512_10205672	All Organisms → Viruses → Predicted Viral	1581
3300032038|Ga0326512_10207131	All Organisms → Viruses → Predicted Viral	1575
3300032038|Ga0326512_10224423	Not Available	1510
3300032038|Ga0326512_10307963	All Organisms → Viruses → Predicted Viral	1272
3300032038|Ga0326512_10311734	All Organisms → Viruses → Predicted Viral	1263
3300032038|Ga0326512_10385283	All Organisms → Viruses → Predicted Viral	1121
3300032038|Ga0326512_10423153	All Organisms → Viruses → Predicted Viral	1062
3300032038|Ga0326512_10535020	Not Available	924
3300032038|Ga0326512_10542760	Not Available	916
3300032038|Ga0326512_10636693	Not Available	830
3300032038|Ga0326512_10682963	Not Available	794
3300032038|Ga0326512_10689580	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctkyH28	789
3300032038|Ga0326512_10743323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	752
3300032038|Ga0326512_10791306	Not Available	723
3300032038|Ga0326512_10936905	Not Available	647
3300032038|Ga0326512_10957416	Not Available	638
3300032038|Ga0326512_11018526	Not Available	612
3300032038|Ga0326512_11040812	Not Available	603
3300032038|Ga0326512_11125939	Not Available	572
3300032038|Ga0326512_11225616	Not Available	540
3300032038|Ga0326512_11266993	Not Available	527
3300032038|Ga0326512_11270793	Not Available	526
3300032038|Ga0326512_11289091	Not Available	521

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	100.00%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	100.00%

Type

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	100.00%

Subtype

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	100.00%

Habitat

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	93.70%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	4.72%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	1.57%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300014047	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1003	Host-Associated
3300014057	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1208	Host-Associated
3300021256	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated
3300021399	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated
3300021426	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated
3300021431	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated
3300031760	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518	Host-Associated
3300031853	Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518	Host-Associated
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated
3300031899	Metatranscriptome of bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518 (Metagenome Metatranscriptome)	Host-Associated
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0120381_10058835	3300014047	Sheep Rumen	MDCEVVAMTEERHECRTYTEMLAVLRKAKADGHTAWWNSEELRAGILIVYVRKEDNNG*
Ga0120384_12969853	3300014057	Sheep Rumen	MTEERHECKTYAEMLAVLKEAKADGHTAWWNSEELMNGELIVYVRKEGKENENG*
Ga0223826_1000923717	3300021256	Cattle And Sheep Rumen	MTEERHECKTYAEMLAVLHKAKADGHTAWWNSEELRNGELIVYVRKEEENG
Ga0223826_100203909	3300021256	Cattle And Sheep Rumen	MTEERHECKNYSEMLAVIREAKEAGHTAWWNSEELRAGILIIYVRKDRKEKNNG
Ga0223826_109230882	3300021256	Cattle And Sheep Rumen	MTEERHECKNYSEMLAVLREAKEAGHTAWWNSEELRAGILIVYVRKEKNDG
Ga0224415_1001118014	3300021399	Cattle And Sheep Rumen	MTEERHECKTYAEMLAVLHKAKADGHTAWWNSEELRAGILIVYVRKDRREKNNG
Ga0224482_100922425	3300021426	Cattle And Sheep Rumen	MTEERHECKNYSEMLAVLHKAKADGHTAWWNSEELRAGILIIYVRKDRKEKNNG
Ga0224423_1000634628	3300021431	Cattle And Sheep Rumen	MTEEKIICQTYSEMAQVLREAKEAGHAAWWNSEELRNGELIVYVRKEEENG
Ga0247610_110906341	3300028833	Rumen	GKGQDDMTEERHECKTYAEMLAVLHKAKVDGHTAWWNSEELRAGILIVYVRKEDENG
Ga0326513_100515838	3300031760	Rumen	MTEEKHECKTYSEMLEVLRKAKADGNTAWWNSEELRNGELIVYVRKDRKEDENG
Ga0326513_100963367	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEGENEGKGLDS
Ga0326513_101010238	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKAGGHTAWWNSEELRNGELIVYVRKDRKENENG
Ga0326513_101091217	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKAGGHTAWWNSEELRNGELIVYVRKEENNG
Ga0326513_102187173	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRAGILIVYVRKDRKENENG
Ga0326513_103142154	3300031760	Rumen	MTEEKHECKTYAEMLAVLREAKANGHTAWWNSEELKAGILIVYVRKEE
Ga0326513_103647522	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKEENDG
Ga0326513_103917373	3300031760	Rumen	MTEEKHECKTYAEMLAVLREAKADGHTAWWNHDELMNGELIVYVRKDGKENENG
Ga0326513_103978934	3300031760	Rumen	MDYGVLNMTEEKHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKDGKENEN
Ga0326513_104016721	3300031760	Rumen	MTEEKHECRTYSEMLAVLREAKEAGHTAWWNSEELMNGELIVYIRKENENG
Ga0326513_104311272	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNHDELMNGELIVYVRKDRKEEENG
Ga0326513_104708274	3300031760	Rumen	MTEEKHECKTYAEMLAVLREAEADGHTAWWNSEELMAGGLIVYVRKEEENG
Ga0326513_105713792	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKEEDNEQNM
Ga0326513_106033052	3300031760	Rumen	MDCGVVAMTEERHECKTYAEMLAVLREAKAGGNTAWWNSEELRNGELIVYVRKDRKENEN
Ga0326513_106408492	3300031760	Rumen	MRFDAMTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRAGILIVYVRKDRKGE
Ga0326513_106997352	3300031760	Rumen	MTEERHECKTYAEMLAVLRKAKADGHTAWWNSEELMAGELIVYVRKEDENE
Ga0326513_108464101	3300031760	Rumen	MTEEKHECKTYAEMLAVLREAKEDGHTAWWNSEELRNGELIVYVRKENENG
Ga0326513_108469352	3300031760	Rumen	MTEERHECKTYAEMLAVLRETKEAGHTAWWNHDELMNGELIVYVRKDRKENENG
Ga0326513_108680083	3300031760	Rumen	MTEEKHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKEKENG
Ga0326513_109885133	3300031760	Rumen	TEEKHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKDKKENENG
Ga0326513_110834712	3300031760	Rumen	QDCMSEEKVICKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKDRKEDENG
Ga0326513_111298681	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNHDELMNGELIVYVRKDRKENENG
Ga0326513_112049583	3300031760	Rumen	MGYEVNDMTEEKHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKDRKENEN
Ga0326513_112231962	3300031760	Rumen	MSEEKVICKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKEENNG
Ga0326513_112910912	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKDRKENENG
Ga0326513_113400812	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKDRKENENG
Ga0326513_114004222	3300031760	Rumen	MTEEKVICKTYAEMLAVLREAKADGNTAWWNHDELMNGELIVYVRKENENG
Ga0326513_114854742	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKENENG
Ga0326513_116718282	3300031760	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEEDNG
Ga0326513_117970802	3300031760	Rumen	MTEEKHECKTYAEMLAVLREAKADGHTAWWNSEELRAGILIVYVRKENENG
Ga0326514_100226626	3300031853	Rumen	MIVICDTYSEMLEVLRICKEKGAEGYLNSEELMNGELIVYVRKDRKENENG
Ga0326514_1004220510	3300031853	Rumen	MTEEKHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKDRKENENG
Ga0326514_1005305410	3300031853	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKDENDG
Ga0326514_100554013	3300031853	Rumen	MTEERHECKTYAEMLAVLREAKAGGHTAWWNSEELRNGELIVYVRKEEDNG
Ga0326514_101077732	3300031853	Rumen	MSEEKVICKTYAEMLAVLREAKANGHTAWWNSEELRNGELIVYVRKENENG
Ga0326514_102479096	3300031853	Rumen	MTEEKHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKEENNG
Ga0326514_102891092	3300031853	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKEENNG
Ga0326514_102957292	3300031853	Rumen	MTEEKHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKDRKEEKNG
Ga0326514_103446051	3300031853	Rumen	TEEKHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKDRKDRKEKSNG
Ga0326514_104827454	3300031853	Rumen	MTEERHECKTYAEMLEVPREAKEAGHTAWWNSEELRAGILIVYVRKDRKENENG
Ga0326514_105850553	3300031853	Rumen	MTEEKIICQTYSEMAQVLREAKADGHTAWWNSEELRNGELIVYVRKEENNGVE
Ga0326514_108662493	3300031853	Rumen	HECKTYAEMLAVLREAKADGHTAWWNSEELRAGILIVYVRKENENG
Ga0326514_110997901	3300031853	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIV
Ga0326514_112143152	3300031853	Rumen	MTEEKHECKTYAEMLAVLRTAKEAGHTAWWNHDELMNGELIVYVRKEENNEQNM
Ga0326514_114045352	3300031853	Rumen	MSEEKVICKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKEENDG
Ga0326514_114516392	3300031853	Rumen	MDCGVLIMTEERHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKENENG
Ga0326514_116130822	3300031853	Rumen	GMTEERHECKTYSDMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKDRKEDNANG
Ga0326511_100283767	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRAGILIVYVRKDGKENENG
Ga0326511_101004886	3300031867	Rumen	MTEERHECKTYAEMLAVFREAKADGHTAWWNHDELMNGELIVYVRKDKKENENG
Ga0326511_101299854	3300031867	Rumen	MTEEKHECKTYAEMLAVLREAKASGNTAWWNSEELRNGELIVYVRKDGKENENG
Ga0326511_101370536	3300031867	Rumen	MTEERHECRTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKEENDG
Ga0326511_101926934	3300031867	Rumen	MTEEKHECKTYAEMLAVLREAKEAGRTAWWNHDELMNGELIVYVRKEENDG
Ga0326511_101960426	3300031867	Rumen	MTEEKHECKTYAEMLAVLREAEADGHTAWWNSEELRNGELIVYVRKDGKENDNG
Ga0326511_102166556	3300031867	Rumen	MTEERHECKTYAEMLEVLREAKADGHTAWWNHDELMNGELIVYVRKEEDNEQNM
Ga0326511_102203754	3300031867	Rumen	MDYGVLNMTEEKHECKTYAEMLEVLREAKEAGHTAWWNHDELMNGELIVYVRKDRKENDN
Ga0326511_102257924	3300031867	Rumen	MIVICDTYSEMLEVLRICKEKGAEGYWSHDELMNGELIVYVRKDRKEEENAKLD
Ga0326511_102403655	3300031867	Rumen	MTEEKHECKTYAEMLAVLREAKADGHTAWWNSEELMNGELIVYVRKEKNDG
Ga0326511_102447403	3300031867	Rumen	MTEEKHECKTYAEMLAVLREAKAGGHTAWWNHDELMNGELIVYVRKDGKENENG
Ga0326511_102564433	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKEAGRTAWWNHDELMNGELIVYVRKEENDG
Ga0326511_102592585	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKASGNTAWWNHNELMNGELIVYVRKENENG
Ga0326511_102867493	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKASGNTAWWNSEELRNGELIVYVRKDRKENENG
Ga0326511_103130614	3300031867	Rumen	MTEERHECKTYSEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEKNDG
Ga0326511_103686922	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKASGNTAWWNSEELRNGELIVYVRKEENDGAE
Ga0326511_104385832	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKDRKEEENAKLD
Ga0326511_106270094	3300031867	Rumen	MDYGVLNMTEEKHECKTYAEMLAVLREAKADGHTAWWNHDELMNGELIVYVRKEENDG
Ga0326511_106313012	3300031867	Rumen	MTEEKHECKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKDGKENENG
Ga0326511_106555403	3300031867	Rumen	MTEEKHECRTYSEMLAVLREAKEAGHTAWWNSEELMNGELIVYVRKENENG
Ga0326511_106817653	3300031867	Rumen	MTEEKHECKTYAEMLAVLREAKADGHTAWWNHDELMNGELIVYVRKEKENG
Ga0326511_107263933	3300031867	Rumen	MTEEKHECKTYAEMLEVLREAKADGHTAWWNHDELMNGELIVYVRKDGKENENG
Ga0326511_107706953	3300031867	Rumen	MTEEKHECKTYAEMLAVLREAEADGHTAWWNSEELRNGELIVYIRKEKENG
Ga0326511_107755472	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNSEELRAGILIVYVRKDEKENENG
Ga0326511_107922004	3300031867	Rumen	MDYGVPNMTEEKHECKTYAEMLEVLREAKEAGHTAWWNHDELMNGELIVYVRKDEKENEN
Ga0326511_108819303	3300031867	Rumen	MTEEKHECKTYAEMLAVLRTAKEAGHTAWWNHDELMNGELIVYVRKDGKENENG
Ga0326511_110000132	3300031867	Rumen	MTEERYECKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKDRKENENG
Ga0326511_110651223	3300031867	Rumen	MTEEKHECKTYAEMLAVLREAKASGNTAWWNSEELRNGELIVYVRKEGENEGKGLDS
Ga0326511_110873782	3300031867	Rumen	MTEERHECKTYAEMLAVLREAEADGHTAWWNHDELMNGELIVYVRKENENG
Ga0326511_111386163	3300031867	Rumen	MDYVVLNMTEERHECKTYAEMLAVLREAKADGHTAWWNSEELMNGELIVYVRKDRKEEENAKLD
Ga0326511_111640362	3300031867	Rumen	MTEERHECKTYSEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKEEDNEQNM
Ga0326511_112244952	3300031867	Rumen	MTEEKVICKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEEKNG
Ga0326511_112594152	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKEEGHTAWWNSEELRNGELIVYVRKEDNNG
Ga0326511_112822592	3300031867	Rumen	MTEEKHKCKTYAEMLAVLREAKADGNTAWWNSEELRNGELIVYVRKEKENG
Ga0326511_113763012	3300031867	Rumen	MGYEVNDMTEERHECKTYAEMLAVLREAKEAGHTAWWNSEELRAGELIVYVRKDGKENEN
Ga0326511_115151663	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKAGWHTAWWNHDELMNGELIVYVRKENENG
Ga0326511_115296292	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKAGGHTAWWNHDELMNGELIVYVRKENENG
Ga0326511_116273462	3300031867	Rumen	MDCGVLIMTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEKNDG
Ga0326511_116598732	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYIRKERGE
Ga0326511_117830211	3300031867	Rumen	MGYEVNDMTEERHECKTYAEMLAVLREAKADGHTAWWNHDELMNGELIVYVRKDRKEEENAKLD
Ga0326511_118713192	3300031867	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRK
Ga0326511_119014772	3300031867	Rumen	YSDSIGEFDNMGYEVNDMTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKENDNG
Ga0326511_120053822	3300031867	Rumen	LSCEVLIMTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEKNDG
Ga0326507_13382372	3300031899	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKDGKEEENAKLD
Ga0326512_100672633	3300032038	Rumen	MTEERHECRTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEENNG
Ga0326512_100853645	3300032038	Rumen	MTEERHECKTYAEMLEVLREAKADGHTAWWNHDELMNGELIVYVRKEENDG
Ga0326512_101011725	3300032038	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNHDELMNGELIVYVRKDRKENENG
Ga0326512_101438922	3300032038	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRAGILIAYVRKDRKENENG
Ga0326512_102056722	3300032038	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRAGILIVYVRKEEKNE
Ga0326512_102071311	3300032038	Rumen	MTEEKHECKTYAEMLAVFREAKASGNTAWWNSEELRNGELIVYVRKDRKENENG
Ga0326512_102244234	3300032038	Rumen	MTEEKHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKDRKENENG
Ga0326512_103079633	3300032038	Rumen	MTEEKHECKTYAEMLAVLREAKASGNTAWWNSEEPRNGELIVYVRKDRKENENG
Ga0326512_103117343	3300032038	Rumen	MTEERHECKTYAEMLAVLREAKEAGHTAWWNSEELRNGELIVYVRKDRKENENAKLD
Ga0326512_103852833	3300032038	Rumen	MTEEKHECKTYAEMLAVLREAKAAGHTAWWNSEELRNGELIVYVRKNGKENENG
Ga0326512_104231532	3300032038	Rumen	MTEEKVICKTYAEMLAVLREAKADGHTAWWNHDELMNGELIVYVRKDRKEEENAKLD
Ga0326512_105350203	3300032038	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRAGILIVYVRKDRKDRKEKSNG
Ga0326512_105427603	3300032038	Rumen	MDYGVLNMTEEKHECKTYAEMLAVLREAKADGHTAWWNHDELMNGELIVYVRKENENG
Ga0326512_106366932	3300032038	Rumen	MTEERHECKTYAEMLAVLREAEADGHTAWWNSEELRAGELIVYVRKDRKGE
Ga0326512_106829632	3300032038	Rumen	MIVICDTYSEMLEVLRICKEKGAEGYWNHDELMNGELIVYIRKDRKENENG
Ga0326512_106895802	3300032038	Rumen	MTEERHECKTYAEMLAVLREAEADGHTAWWNHDELMNGELIVYVRKDRKEEKNG
Ga0326512_107433232	3300032038	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRAGILIVYVRKEKDNG
Ga0326512_107913062	3300032038	Rumen	MTEEKHECKTYAEMLAVLREAKEAGHTAWWNSEELMNGELIAYVRKEEDNEQNM
Ga0326512_109369051	3300032038	Rumen	MTEEKVICKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEDDNEQNM
Ga0326512_109574162	3300032038	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEENDGAE
Ga0326512_110185262	3300032038	Rumen	MTEERHECKTYAEMLAVLKEAKADGHTAWWNSEELRNGELIVYVRKEDNNG
Ga0326512_110408122	3300032038	Rumen	MTEEKHECKTYAEMLAVLREAKASGNTAWWNHDELMNGELIVYVRKEENNG
Ga0326512_111259392	3300032038	Rumen	MGYEVNDMTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKENENG
Ga0326512_112256162	3300032038	Rumen	MTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKEEENG
Ga0326512_112669931	3300032038	Rumen	TEEKHECKTYAEMLAVLREAEADGHTAWWNSEELRAGILIVYVRKEGENEGKGLDS
Ga0326512_112707932	3300032038	Rumen	EKHECKTYAEMLAVLREAKADGHTAWWNHDELMNGELIVYVRKEENDG
Ga0326512_112890911	3300032038	Rumen	CQFIHMDCGVFAMTEERHECKTYAEMLAVLREAKADGHTAWWNSEELRNGELIVYVRKENENG