Metagenome Family F089609

Overview

Basic Information

• Family ID: F089609
• Family Type: Metagenome
• Number of Sequences: 108
• Average Sequence Length: 55 residues
• Representative Sequence: MSDLDIIIFAIAGVAIILISLYVVISMTQDINATIRKCNEIGTWAKNELERRTDG
• Number of Associated Samples: 9
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 90.65 %
• % of genes near scaffold ends (potentially truncated): 13.89 %
• % of genes from short scaffolds (< 2000 bps): 77.78 %
• Associated GOLD sequencing projects: 9
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (41.667 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (93.519 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (93.519 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 62.65%
  β-sheet: 0.00%
  Coil/Unstructured: 37.35%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF11753	DUF3310	4.63
PF03819	MazG	3.70
PF14354	Lar_restr_allev	2.78
PF07866	DUF1653	1.85
PF04448	DUF551	1.85
PF07374	DUF1492	1.85
PF01381	HTH_3	0.93
PF05119	Terminase_4	0.93
PF12961	DUF3850	0.93
PF09524	Phg_2220_C	0.93
PF11417	Inhibitor_G39P	0.93
PF08423	Rad51	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG4728	Uncharacterized conserved protein, DUF1653 family	Function unknown [S]	1.85
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.93
COG3747	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.33 %
Unclassified	root	N/A	41.67 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
cellular organisms	root	All Organisms → cellular organisms	29.63 %
Viruses	superkingdom	All Organisms → Viruses	28.70 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.70 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.15 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.48 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	21.30 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	6.48 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.70 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	17.59 %
Methanomada group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group	6.48 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.85 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.70 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	12.96 %
Methanobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria	6.48 %
Negativicutes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	4.63 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.85 %
Coriobacteriia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia	1.85 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.70 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12.96 %
Methanobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales	6.48 %
Acidaminococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales	3.70 %
Chloroflexi bacterium HGW-Chloroflexi-4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	1.85 %
Coriobacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales	1.85 %
Selenomonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.70 %
Methanobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	6.48 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5.56 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	5.56 %
Acidaminococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae	3.70 %
Atopobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Atopobiaceae	1.85 %
Chloroflexi bacterium HGW-Chloroflexi-4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	1.85 %
Selenomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae	0.93 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.70 %
Methanobrevibacter	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	6.48 %
Ruthenibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium	5.56 %
Phascolarctobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium	3.70 %
Bilifractor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor	3.70 %
Parafannyhessea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Atopobiaceae → Parafannyhessea	1.85 %
Chloroflexi bacterium HGW-Chloroflexi-4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	1.85 %
unclassified Lachnospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae	0.93 %
Anaerovibrio	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Anaerovibrio	0.93 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.70 %
unclassified Methanobrevibacter	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter	6.48 %
Ruthenibacterium lactatiformans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	5.56 %
Bilifractor porci	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor → Bilifractor porci	3.70 %
Phascolarctobacterium succinatutens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium succinatutens	3.70 %
Parafannyhessea umbonata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Atopobiaceae → Parafannyhessea → Parafannyhessea umbonata	1.85 %
Chloroflexi bacterium HGW-Chloroflexi-4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	1.85 %
Lachnospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	0.93 %
unclassified Anaerovibrio	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Anaerovibrio → unclassified Anaerovibrio	0.93 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.70 %
Methanobrevibacter sp.	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	6.48 %
Ruthenibacterium lactatiformans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	5.56 %
Bilifractor porci	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor → Bilifractor porci	3.70 %
Phascolarctobacterium succinatutens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium succinatutens	3.70 %
Parafannyhessea umbonata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Atopobiaceae → Parafannyhessea → Parafannyhessea umbonata	1.85 %
Chloroflexi bacterium HGW-Chloroflexi-4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	1.85 %
Anaerovibrio sp. RM50	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Anaerovibrio → unclassified Anaerovibrio → Anaerovibrio sp. RM50	0.93 %
Lachnospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	0.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300021255|Ga0223825_12789914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor → Bilifractor porci	645
3300021256|Ga0223826_10004947	Not Available	16932
3300021256|Ga0223826_10018045	Not Available	7180
3300021256|Ga0223826_10214869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1674
3300021399|Ga0224415_10426443	All Organisms → Viruses → Predicted Viral	1135
3300021400|Ga0224422_10858591	Not Available	44926
3300021431|Ga0224423_10006346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14395
3300031760|Ga0326513_10030553	All Organisms → Viruses → Predicted Viral	4044
3300031760|Ga0326513_10101023	All Organisms → Viruses → Predicted Viral	2366
3300031760|Ga0326513_10130556	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	2106
3300031760|Ga0326513_10169406	All Organisms → Viruses → Predicted Viral	1868
3300031760|Ga0326513_10193318	All Organisms → Viruses → Predicted Viral	1756
3300031760|Ga0326513_10203823	All Organisms → cellular organisms → Bacteria	1713
3300031760|Ga0326513_10210205	All Organisms → Viruses → Predicted Viral	1688
3300031760|Ga0326513_10213391	Not Available	1676
3300031760|Ga0326513_10259018	All Organisms → Viruses → Predicted Viral	1527
3300031760|Ga0326513_10307995	All Organisms → Viruses → Predicted Viral	1402
3300031760|Ga0326513_10328808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor → Bilifractor porci	1357
3300031760|Ga0326513_10373843	All Organisms → Viruses → Predicted Viral	1272
3300031760|Ga0326513_10451041	Not Available	1155
3300031760|Ga0326513_10486350	All Organisms → Viruses → Predicted Viral	1110
3300031760|Ga0326513_10504238	All Organisms → Viruses → Predicted Viral	1089
3300031760|Ga0326513_10543521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	1046
3300031760|Ga0326513_10615988	Not Available	977
3300031760|Ga0326513_10864187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium succinatutens	806
3300031760|Ga0326513_10913602	Not Available	780
3300031760|Ga0326513_11073635	Not Available	708
3300031760|Ga0326513_11096998	Not Available	699
3300031760|Ga0326513_11228918	Not Available	652
3300031760|Ga0326513_11251530	All Organisms → cellular organisms → Bacteria	645
3300031760|Ga0326513_11279616	Not Available	636
3300031760|Ga0326513_11323398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	623
3300031760|Ga0326513_11541118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	565
3300031760|Ga0326513_11588797	Not Available	554
3300031760|Ga0326513_11638350	Not Available	543
3300031760|Ga0326513_11652366	Not Available	540
3300031760|Ga0326513_11854230	Not Available	501
3300031853|Ga0326514_10022996	All Organisms → Viruses → Predicted Viral	4363
3300031853|Ga0326514_10045429	All Organisms → Viruses → Predicted Viral	3263
3300031853|Ga0326514_10052020	All Organisms → Viruses → Predicted Viral	3081
3300031853|Ga0326514_10053575	All Organisms → Viruses → Predicted Viral	3042
3300031853|Ga0326514_10090339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Atopobiaceae → Parafannyhessea → Parafannyhessea umbonata	2427
3300031853|Ga0326514_10107152	Not Available	2252
3300031853|Ga0326514_10292850	All Organisms → Viruses → Predicted Viral	1417
3300031853|Ga0326514_10352646	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1292
3300031853|Ga0326514_10424298	All Organisms → Viruses → Predicted Viral	1175
3300031853|Ga0326514_10639831	Not Available	941
3300031853|Ga0326514_10707420	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	889
3300031853|Ga0326514_10798281	Not Available	829
3300031853|Ga0326514_10802146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	826
3300031853|Ga0326514_10837848	Not Available	805
3300031853|Ga0326514_10842405	Not Available	803
3300031853|Ga0326514_10958447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium succinatutens	742
3300031853|Ga0326514_11002842	Not Available	722
3300031853|Ga0326514_11428698	Not Available	578
3300031853|Ga0326514_11547236	Not Available	548
3300031853|Ga0326514_11642057	Not Available	527
3300031867|Ga0326511_10034968	All Organisms → Viruses → Predicted Viral	4216
3300031867|Ga0326511_10059377	Not Available	3325
3300031867|Ga0326511_10089826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	2760
3300031867|Ga0326511_10139980	All Organisms → Viruses → Predicted Viral	2254
3300031867|Ga0326511_10142720	All Organisms → Viruses → Predicted Viral	2234
3300031867|Ga0326511_10234501	All Organisms → Viruses → Predicted Viral	1770
3300031867|Ga0326511_10280149	All Organisms → Viruses → Predicted Viral	1624
3300031867|Ga0326511_10322632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Anaerovibrio → unclassified Anaerovibrio → Anaerovibrio sp. RM50	1515
3300031867|Ga0326511_10411270	All Organisms → Viruses → Predicted Viral	1339
3300031867|Ga0326511_10474019	All Organisms → Viruses → Predicted Viral	1244
3300031867|Ga0326511_10479203	All Organisms → Viruses → Predicted Viral	1237
3300031867|Ga0326511_10483011	All Organisms → Viruses → Predicted Viral	1232
3300031867|Ga0326511_10551462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	1147
3300031867|Ga0326511_10572535	All Organisms → Viruses → Predicted Viral	1124
3300031867|Ga0326511_10661117	All Organisms → Viruses → Predicted Viral	1038
3300031867|Ga0326511_10698043	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1007
3300031867|Ga0326511_10730348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor → Bilifractor porci	981
3300031867|Ga0326511_10754357	Not Available	963
3300031867|Ga0326511_10754363	Not Available	963
3300031867|Ga0326511_10799166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Bilifractor → Bilifractor porci	931
3300031867|Ga0326511_10873498	Not Available	884
3300031867|Ga0326511_10889098	Not Available	875
3300031867|Ga0326511_10951636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Atopobiaceae → Parafannyhessea → Parafannyhessea umbonata	840
3300031867|Ga0326511_10977957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	826
3300031867|Ga0326511_10993901	Not Available	818
3300031867|Ga0326511_11065334	Not Available	784
3300031867|Ga0326511_11171407	Not Available	739
3300031867|Ga0326511_11184510	Not Available	734
3300031867|Ga0326511_11306125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-4	690
3300031867|Ga0326511_11311369	Not Available	688
3300031867|Ga0326511_11317365	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	686
3300031867|Ga0326511_11400245	Not Available	660
3300031867|Ga0326511_11522471	Not Available	625
3300031867|Ga0326511_11536919	Not Available	621
3300031867|Ga0326511_11544357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium succinatutens	619
3300031867|Ga0326511_11548641	Not Available	618
3300031867|Ga0326511_11956614	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	528
3300031867|Ga0326511_12056622	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	510
3300032038|Ga0326512_10006441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	8466
3300032038|Ga0326512_10036781	All Organisms → Viruses → Predicted Viral	3679
3300032038|Ga0326512_10043505	Not Available	3401
3300032038|Ga0326512_10059248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium → Phascolarctobacterium succinatutens	2935
3300032038|Ga0326512_10088715	Not Available	2418
3300032038|Ga0326512_10281920	All Organisms → Viruses → Predicted Viral	1335
3300032038|Ga0326512_10289008	All Organisms → Viruses → Predicted Viral	1317
3300032038|Ga0326512_10417128	Not Available	1071
3300032038|Ga0326512_10484441	Not Available	981
3300032038|Ga0326512_10611759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruthenibacterium → Ruthenibacterium lactatiformans	851
3300032038|Ga0326512_10675879	Not Available	799
3300032038|Ga0326512_11289784	Not Available	521

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	100.00%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	100.00%

Type

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	100.00%

Subtype

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	100.00%

Habitat

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	93.52%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	6.48%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300021255	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated
3300021256	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated
3300021399	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated
3300021400	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated
3300021431	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated
3300031760	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518	Host-Associated
3300031853	Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518	Host-Associated
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0223825_127899142	3300021255	Cattle And Sheep Rumen	MSNLDIIIFVIAGVVIILISLYVAISMTQDINATIRKCNEIEDWAKNELERRTDGT
Ga0223826_1000494716	3300021256	Cattle And Sheep Rumen	MSDLDIIIFAIAGVAIILISLYMVISITRDINKTIRKCDEIGAWAKKELERRTNEDIV
Ga0223826_100180455	3300021256	Cattle And Sheep Rumen	MSELDIIIFFIAGVAIILISLYVVVSMTHDINKTIRKCDEIGAWAKKELEKRTE
Ga0223826_102148694	3300021256	Cattle And Sheep Rumen	MSDSDIIIFFIAGVIIILISLYVVMSMTKDIDKTIRECEKIGVWAKNELERRTE
Ga0224415_104264433	3300021399	Cattle And Sheep Rumen	MSDLDIIIFVIAGVAIILISLYVVISMTKDINATIHKCKEIEDWAKNELERRTDVEGREV
Ga0224422_1085859113	3300021400	Cattle And Sheep Rumen	MSDLDIIIFAVSGVAIILISLYVVISMTQDINETIRKCNEIEAWAKNELERRTDDKTNKGSSY
Ga0224423_1000634619	3300021431	Cattle And Sheep Rumen	MSELDIIIFAISGVAIILISLYVVISMTQDINKTIYKCNEIEAWAKNELERRTE
Ga0326513_100305537	3300031760	Rumen	MSDLDIIVFAIAGVAIILISLYVVISMTQDINKTICKCNEIGTWAKNELERRTDD
Ga0326513_101010232	3300031760	Rumen	MSDLDIIIFAIDGVAIILISLYVVISMTQDINNVIGKCNEIGTWAKNELERRTDD
Ga0326513_101305564	3300031760	Rumen	MSDTDIIVFAIAGVAIILISLYVVISMTRDINATIHKCKEIEDWAKNELERRTDEAD
Ga0326513_101694064	3300031760	Rumen	MSDLDIIIFGVACVVIILISLYVVISMTHDINETIRKCNEIGTWAKNELERRTDG
Ga0326513_101933182	3300031760	Rumen	MSDLDIIIFGVACVVIILISLYVVISMTKDINATIRKCDEIGTWAKNELERRTDD
Ga0326513_102038232	3300031760	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETIRKCDEIGTWAKNELERRTDD
Ga0326513_102102053	3300031760	Rumen	MSDLDIIIFFIAGVAIILISLYVVISMTQDINKTIGKCNEIGTWAKNELERRTDE
Ga0326513_102133911	3300031760	Rumen	MSDLDIIVFAIAGVAIILISLYVVISITQDINETIRKCNEIGTWAKNELERRIDG
Ga0326513_102590183	3300031760	Rumen	MSDLDIITFAISGVVIILISLYVVISMTQDINNVIGKCNEIGTWAKNELERRTND
Ga0326513_103079952	3300031760	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTKDINATIHKCKEIEDWAKNELERRTDGERREV
Ga0326513_103288083	3300031760	Rumen	MIDLDIIIFAIAGVAIILISLYVVISMTQDINKTICKCNEIGTWAKNELERRTDETD
Ga0326513_103738432	3300031760	Rumen	MTDLDIIIFGVACVVIILISLYVVISMTQDINATIHKCNKIGTWAKNELERRSDG
Ga0326513_104510411	3300031760	Rumen	MSDLDIIIFAISGVAIILISLYVVISMSQDINETIRKCNEIGTWAKNELERRTDD
Ga0326513_104863504	3300031760	Rumen	MSDLDIIIFGVACVVIILISLYVVISMTKDINATIRKCNEIGTWAKNELERRTDGQDR
Ga0326513_105042382	3300031760	Rumen	MSDLEIIIFAIAGVTIILISLYVVISITQDINETIHKCKEIEDWAKNELERGTDE
Ga0326513_105435212	3300031760	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTHDINETIRKCNEIGTWAKNELERRSDGEKQSD
Ga0326513_106159882	3300031760	Rumen	MTDLDIIIFAISGVAIILISLYVVISMTQDINETIHKCNEIGTWAKNELERRTE
Ga0326513_108641873	3300031760	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETMRKCNEIGNWAKNELEGRTE
Ga0326513_109136023	3300031760	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTKDINATIHKCNEIGTWA
Ga0326513_110736352	3300031760	Rumen	MSDLDIIVFAIAGVTIILISLYVVISMTKDINATIHKCKEIGDWAKNELERRTDD
Ga0326513_110969981	3300031760	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETMRKCNEIGDWAKNELERRTDK
Ga0326513_111281603	3300031760	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTKDINATIHKCKEIE
Ga0326513_112289182	3300031760	Rumen	MSDLDIIVFAIAGVAIILISLYVVISMTKDINATIHKCKEIEDWAKNELERRTDK
Ga0326513_112515301	3300031760	Rumen	MNDLDIIIFSIVGVVIILFSLYVVISMTHDINETMRKCNEIGTWAKNELERRNDEMQ
Ga0326513_112796163	3300031760	Rumen	IFFIAGVAIILISLYVVVSMTQDINATIHKCKEIEDWAKNELERRTDGEKQSD
Ga0326513_113233982	3300031760	Rumen	MSDLDIIIFFIAGVAIILISLYVVVSMTQDINATIHKCKEIEDWAKN
Ga0326513_115411182	3300031760	Rumen	MSDLDIIIFAIAGVTIILISLYVVVSMTQDINATIHKCKEIEDWAKNELERRTDADD
Ga0326513_115887973	3300031760	Rumen	GKENRMSDLDIIIFFIAGVAIILISLYVVISMTKDINATIHKCNEIGTWAKNELERRNDD
Ga0326513_116383502	3300031760	Rumen	MSDLDIIIFGVAGVAIILISLYVVISMTKDINATIHKCKEIEDWAKNELERRTDGQDR
Ga0326513_116523662	3300031760	Rumen	MSDLDIIIFVIAGVAIILISLYVVISMTKDINATIHKCKEIEDWAKNELERRTE
Ga0326513_118542302	3300031760	Rumen	MSDLDIIIFAIAGVAIILISLYVVVSVTQDINATIRKCDEIGTWAKNELERRTDD
Ga0326514_1002299614	3300031853	Rumen	MSDTDIIIFVIAGVAIILISLYVVISMTHDINETICKCNEIGTWAKNELERRTDK
Ga0326514_100454295	3300031853	Rumen	MSDLDIIIFGVAGVAIILISLYVVVSMTQDINATIHKCKEIEDWAKNELGRRSDDLQH
Ga0326514_100520204	3300031853	Rumen	MIDLDIIIFAITGVAIILISLYVVISMTHDINETMRKCNEIGTWAKNELERRNDD
Ga0326514_100535752	3300031853	Rumen	MSDLGIIIFAIAGVAIILISLYVVISMTQDINGTIRKCNEIEDWAKNELERRTDGQG
Ga0326514_100903395	3300031853	Rumen	MTDLDIIIFAIAGVAIILISLYVVISMTQDINETMRKCDEIGTWAKNELERRTDD
Ga0326514_101071524	3300031853	Rumen	MSDLDIIIFVIAGVTIILISLYVVVSMTQDINATIHKCKEIEDWAKKRIGKEKR
Ga0326514_102928501	3300031853	Rumen	FFIAGVAIILISLYVVISMTQDINATIHKCNEIGTWAKNELERRTDD
Ga0326514_103526464	3300031853	Rumen	VAIILISLYVVISMTKDINATIHKCKEIEDWAKNELERRTDGERREV
Ga0326514_104242982	3300031853	Rumen	MSDLDIIIFAIAGAVIILISLYVVISITQDINATIHKCKEIEDWAKNELERRTE
Ga0326514_106398314	3300031853	Rumen	MSDLDIIIFAISGVAIILISLYVVISMTQDINETMRKCNEMGTWAKNELERRTDD
Ga0326514_107074203	3300031853	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETIHKCKEIEDWAKNELERRTDG
Ga0326514_107982812	3300031853	Rumen	MSDLDIIIFFIAGVAIILISLYVVISMTHDINKTIYECNKIGAWAKNELERRTDG
Ga0326514_108021463	3300031853	Rumen	MSDLDIIIFVISGAAIILISLYVVISMTQDINETIRKCDEIGTWAKNELERRTDGQDR
Ga0326514_108378481	3300031853	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETIHKCKEIEDWAKNELERRTDGERREV
Ga0326514_108424052	3300031853	Rumen	MSELGIIIFAISGIVIILISLYVVISMTQDINETMRKCNEIGTWAKNELERRTDGEKQSD
Ga0326514_109584472	3300031853	Rumen	MSDLDIIVFAIAGVAIILISLYVVVSMTKDINATIHKCKEIEDWAKNELERRTDDLQH
Ga0326514_110028422	3300031853	Rumen	MSDLDIIIFFIAGVAIILISLYVVVSMTQDINATIHKCKEIEDWAKNELERRTDGEKQSD
Ga0326514_114286982	3300031853	Rumen	MSDLDIIVFAIAGVAIILISLYVVVSMTKDIDITIRECEKIGVWAKNELERRTDGEKQSD
Ga0326514_115472361	3300031853	Rumen	RMSDLEIIIFAIAGVAIILISLYVVVSVTQDINATIRKCDEIGTWAKNELERRTDGT
Ga0326514_116420571	3300031853	Rumen	IILISLYVVVSMTQDINATIHKCNEIGTWAKNELERRTDETD
Ga0326511_1003496810	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINATIRKCNEIGTWAKNELERRTDG
Ga0326511_100593777	3300031867	Rumen	MTDLDIIIFVIAGVTIILISLYVVISMTQDINETIYKCKEIETWARNELERRNK
Ga0326511_100898267	3300031867	Rumen	MSDLDIIVFAIAGVAIILISLYVVISMTQDINETIRKCDEIGTWAKNELERRSE
Ga0326511_101399807	3300031867	Rumen	MTDLDIIIFAIAGVVIILISLYVVISMTQDINETIHKCNEIEDWAKNELERRSDGQG
Ga0326511_101427206	3300031867	Rumen	MSNLDITIFGVAGVVIILFSLYVVISMTKDINKVIGKCNEIGTWAKNELERRTDGQE
Ga0326511_102345014	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINSTIHKCKEIEDWAKNELERRTDD
Ga0326511_102801493	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYAVISMTKDINGTIRKCNEIGTWAKNELERRSDD
Ga0326511_103226324	3300031867	Rumen	MSDLDIIVFAIAGVAIILISLYVVISMTQDINETMRKCNEIGTWAKNELERRTDGQRTGD
Ga0326511_104112704	3300031867	Rumen	MSDLEIIIFAIAGVTIILISLYVVISITQDINETIHKCKEIEDWAKNELERRTDD
Ga0326511_104740194	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTRDINATIHKCNEIGTWAKNELERRTDE
Ga0326511_104792032	3300031867	Rumen	MSDLDIIIFGVACVVIILISLYVVISMTKDINATIHKCKEIEDWAKNELERRTND
Ga0326511_104830112	3300031867	Rumen	MGGKENRMNDLDIIIFAIAGVAIILISLYVVISMTKDINATIRKCNEIRNWAKNELERRSDG
Ga0326511_105514625	3300031867	Rumen	MSDLEIITFAIAGVAIILISLYVVISMTQDINETMRKCNEIGTWAK
Ga0326511_105725354	3300031867	Rumen	MSDLDIIIFAIAGVVIILISLYVVISMTHDINETIRKCNGIGAWAKNELERRTDGEKQSD
Ga0326511_106611173	3300031867	Rumen	MTDLDIIIFAIAGVVIILISLYVVISMTQDINEIIHKCNEIGTWAKNELERRTE
Ga0326511_106980433	3300031867	Rumen	MSDLEIITFAIAGVAIILISLYVVISMSQDINATIRKCNEIGTWAKNELERRTDG
Ga0326511_107303482	3300031867	Rumen	MSDLEIIIFAIAGVTIILISLYVVISMTKDINATIHKCKEIEDWAKNELERRADG
Ga0326511_107543572	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETIHKCKEIEDWAKNELERRSDG
Ga0326511_107543631	3300031867	Rumen	IAGVTIILISLYVVISITQDINETIHKCKEIEDWAKNELERRSDG
Ga0326511_107991662	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETIRKCNEIGTWAKNELERRSDETN
Ga0326511_108734984	3300031867	Rumen	MTDLDIIIFAIAGVAIILISLYVVISMTHDINETMRKCNEIGTWAKNELKRRTDD
Ga0326511_108890981	3300031867	Rumen	KENRMSDLDIIIFAIAGVAIILFSLYVVISITQDVNATIHKCKEIEDWAKNELERRTDGEKQSD
Ga0326511_109516363	3300031867	Rumen	MSDLDIIVFAIAGVAIILISLYVVISMTQDINETMRKCNEIGIWVKNELERRTDD
Ga0326511_109779572	3300031867	Rumen	MSDLDIIIFFIAGVAIILISLYVVISMTQDINATIRKCNEIGTWAKNELERRTNG
Ga0326511_109939013	3300031867	Rumen	MSDLDIIIFVISGAAIILISLYVVISMTKDINKVIGKCNEIGTWAKNELERRTDD
Ga0326511_110653343	3300031867	Rumen	MSDLDIIIFGVAGVVIILISLYVVISMTQDINETIRKCNEIGTWAKNELERRTDE
Ga0326511_111714072	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYVVVSMTRDINETMRKCNEIGAWAKNELERRTDGQG
Ga0326511_111845101	3300031867	Rumen	MSDLDIIIFFIAGVAIILISLYVVISITQDINATIHKCKEIEDWAKNELERRTDGEKQ
Ga0326511_113061253	3300031867	Rumen	NRMSDLDIIIFFIAGVAIILISLYVVISMTQDINKTIGKCNEIGTWAKNELERRTE
Ga0326511_113113692	3300031867	Rumen	MSDLEIIIFAIAGVAIILFSLYVVISMTQDINETIRKCNEIGTWAKNELERRTDGQG
Ga0326511_113173653	3300031867	Rumen	MNDLDIIIFSIAGVVIILFSLYVVISMTHDINETMRKCNEIGTWAKNELERRTDG
Ga0326511_114002452	3300031867	Rumen	MSDLDIIIFVIAGVVIILFSLYVVISMTKDINATIHKCNEIGTWAKNELERRTDGEKQSD
Ga0326511_115224712	3300031867	Rumen	MSDLDIIIFAIAGVTIILISLYVVISITQDINETIHKCKEIEDWAKNELERRTDD
Ga0326511_115369192	3300031867	Rumen	MSDLDIIIFGVACVVIILISLYVVISMTQDINKVIGKCNEIGTWAKNELERRTDD
Ga0326511_115443572	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETIHKCKEIEDWAKNELERRTDE
Ga0326511_115486412	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETIRKCNEIRDWAKNELERRTDD
Ga0326511_119566143	3300031867	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTHDINETMRKCNEIRDWAKKELERRTDG
Ga0326511_120566221	3300031867	Rumen	AGVAIILISLYVVISMTQDINSTIHKCKEIGTWAKNELERRSDG
Ga0326512_1000644115	3300032038	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTHDINETIRKCNEIGVWAKNELERRTDENNNLH
Ga0326512_100367815	3300032038	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTKDIDITIRECEKIGVWAKNELERRTDD
Ga0326512_100435053	3300032038	Rumen	MSDLDIIVFAIAGVAIILLSLYVVISMTQDINETIRKCNEIGTWAKNELERRTDGSV
Ga0326512_100592485	3300032038	Rumen	MSDLDIIIFAIAGVAIILISLYVVVSVTQDINATIRKCDEIGTWAKNELERRSDETN
Ga0326512_100887155	3300032038	Rumen	MSDLEIIIFAIAGVTIILISLYVVISITQDINETIHKCKEIEDWAKNELERRSDG
Ga0326512_102819202	3300032038	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTKDINATIHKCNEIGTWAKNELERRTDD
Ga0326512_102890082	3300032038	Rumen	MSDLEIITFAIAGVAIILISLYVVISMTQDINETMRKCNEIGTWAKNELERRTDD
Ga0326512_104171282	3300032038	Rumen	MSDLDIIVFAIAGVAIILISLYVVVSMTKDIDITIRECEKIGVWAKNELERRTE
Ga0326512_104844411	3300032038	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTQDINETIHKCKEIEDWAKNELERRSDD
Ga0326512_106117593	3300032038	Rumen	MSDLDIIIFAISGVAIILISLYVVISMSQDINETIRKCNEIGTWAKNELERRTNG
Ga0326512_106758792	3300032038	Rumen	MSDLDIIIFAIAGVAIILISLYVVISMTKDINATIHKCNEIGTWAKNELERRTDE
Ga0326512_112897841	3300032038	Rumen	MSDLDIIIFGVACVVIILISLYVVISMTQDIDKTIRECEKIGVWAKNELERRTDD