NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000010

Scaffold Ga0210394_10000010


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000010 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)490733
Total Scaffold Genes433 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)283 (65.36%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F000348Metagenome / Metatranscriptome1250Y
F001343Metagenome / Metatranscriptome719Y
F002831Metagenome / Metatranscriptome527Y
F005270Metagenome / Metatranscriptome406Y
F008958Metagenome / Metatranscriptome325Y
F013198Metagenome / Metatranscriptome273Y
F018979Metagenome / Metatranscriptome232Y
F040248Metagenome / Metatranscriptome162Y
F087361Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000010120F040248AGGMAMNNISSDSPRTAGTKKPYEKPAFRYEQVFVTTALSCGKVGTNTANCIAHSSSS
Ga0210394_10000010144F008958AGGAMAERKTHARVTEEAEMKLVRFEDINGRETFVNPDRVNHVSDYGSGTTEINFGDKQASVFVAVEVSAVASTLLKAGS
Ga0210394_1000001026F018979N/AMRAAALLFSLALAACSSQPRPAPAPDPSAVLQAIPAADPAQYERIQDMKKWRNPYLIIREDGVALFDSADSAEIILKTDEVLPALARLPATNWPYGRVVAAAGESARASEQDGVAIRRNKGIVGGMLEGAHVTVKWVPAG
Ga0210394_10000010264F013198GAGGMRGRSKRNSSARGASNGSGNRAKRVGPRRAALSKLTTRSQSAYDRALHVIAAMRRDPNLRLSAATRLHGVKAETIRKYFPSELRKSGGSFRVRKSDRYSANIYLPDRNGNHVLVSTRSSKERKQASQYLRDLGRYLRGQKNALAKWHGKKIAGVELVTAGRTIAAIEPALSEFSLYRAANGGAA
Ga0210394_10000010294F000348N/AVLAPVLVVSLVVLAAGDWRAVGQTEAGDKVSVSSVRVLKNNQRVALVRVEYKDPAELPQGGPFVEMRARVRFNCTSGSAAPTTEWFYSRDHSGRCVVSKKATHDEQFGKNPEGGFVDLVSKSVCGQTK
Ga0210394_10000010327F087361N/AVLINLLQALLAIILGNVVYFLLIPSLPPVARHQPLHLDLGIVLDFWLCLVAYGLIRTARRWR
Ga0210394_10000010345F000238AGGMAPPAASRAPRWYTIPVRVGLVTFIGTLLCFAVSLLLAILGTVIVAALRGVHPDMRIAYRHIALPVALVAGSIIFVLALAMEIRHYRQAKTLSAIERLG
Ga0210394_1000001038F005270N/AVVAGENSKMDPHFKSAPSAEVSGADLASVVASLEPDQLISTKAKHHCPRRQLTRTEMILFWALRFYLVFMFGVVIYQVWSGAH
Ga0210394_10000010394F002831N/AVPETPPNDDHKHRRHAVYASETTGLLLIALMLLVLTLVRYWHDLHWSLR
Ga0210394_1000001069F001343AGGAGMKFATVSKSLVMGLALLLASSAFAATKASLTLQSPTTINGTKLKPGEYKLQWDGSGPDVEVSILQGKAVVAKVPAKVVDLNKPSDNNAAVLKHNDDGTSTLAGARFEGKKFALEIGDSSGGMQAGSSK
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