Metagenome / Metatranscriptome Family F087361

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087361
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	68 residues
Representative Sequence	MVSKPTVLINFLQALLAIILGNVVYFALVPSLPPVARHHPFHMDLGIVLDFSFCLVAYGLIRTARKWR
Number of Associated Samples	92
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.90 %
% of genes near scaffold ends (potentially truncated)	27.27 %
% of genes from short scaffolds (< 2000 bps)	64.55 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (10.909 % of family members)
Environment Ontology (ENVO)	Unclassified (20.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.42% β-sheet: 0.00% Coil/Unstructured: 39.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF17191	RecG_wedge	26.36
PF13185	GAF_2	22.73
PF13180	PDZ_2	7.27
PF13492	GAF_3	6.36
PF01590	GAF	5.45
PF16881	LIAS_N	1.82
PF12697	Abhydrolase_6	1.82
PF01084	Ribosomal_S18	0.91
PF13442	Cytochrome_CBB3	0.91
PF00069	Pkinase	0.91
PF01553	Acyltransferase	0.91
PF07843	DUF1634	0.91
PF00271	Helicase_C	0.91
PF13466	STAS_2	0.91
PF00270	DEAD	0.91
PF13646	HEAT_2	0.91
PF04055	Radical_SAM	0.91
PF14572	Pribosyl_synth	0.91
PF01925	TauE	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.64
COG0238	Ribosomal protein S18	Translation, ribosomal structure and biogenesis [J]	0.91
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.91
COG4272	Uncharacterized membrane protein	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.00 %
Unclassified	root	N/A	20.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.00 %
Unclassified	root	N/A	20.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.00 %
Unclassified	root	N/A	20.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	68.18 %
Unclassified	root	N/A	20.00 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	29.09 %
Unclassified	root	N/A	20.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.45 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.91 %
bacterium HR09	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR09	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	29.09 %
Unclassified	root	N/A	20.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.45 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.91 %
bacterium HR09	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR09	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	29.09 %
Unclassified	root	N/A	20.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.45 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.91 %
bacterium HR09	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR09	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.00 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	16.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.45 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.91 %
bacterium HR09	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR09	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.45 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	10.91 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.91 %
bacterium HR09	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR09	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_76399	All Organisms → cellular organisms → Bacteria → Acidobacteria	1439	Open in IMG/M
3300003505\|JGIcombinedJ51221_10453425	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300004633\|Ga0066395_10089728	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR09	1459	Open in IMG/M
3300005329\|Ga0070683_100223617	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1789	Open in IMG/M
3300005434\|Ga0070709_10005824	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	6680	Open in IMG/M
3300005435\|Ga0070714_100652161	All Organisms → cellular organisms → Bacteria → Acidobacteria	1013	Open in IMG/M
3300005436\|Ga0070713_100847362	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300005436\|Ga0070713_101195027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300005436\|Ga0070713_102152307	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005467\|Ga0070706_100058336	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3563	Open in IMG/M
3300005471\|Ga0070698_100481288	All Organisms → cellular organisms → Bacteria → Acidobacteria	1178	Open in IMG/M
3300005526\|Ga0073909_10319182	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	711	Open in IMG/M
3300005526\|Ga0073909_10432361	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005529\|Ga0070741_10388432	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1286	Open in IMG/M
3300005533\|Ga0070734_10426109	Not Available	756	Open in IMG/M
3300005538\|Ga0070731_10010547	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	6847	Open in IMG/M
3300005538\|Ga0070731_10750927	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005542\|Ga0070732_10661045	Not Available	635	Open in IMG/M
3300005587\|Ga0066654_10815699	Not Available	530	Open in IMG/M
3300005764\|Ga0066903_100076880	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4323	Open in IMG/M
3300005994\|Ga0066789_10086385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1353	Open in IMG/M
3300006028\|Ga0070717_10002290	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13426	Open in IMG/M
3300006028\|Ga0070717_10017907	All Organisms → cellular organisms → Bacteria	5525	Open in IMG/M
3300006028\|Ga0070717_10208791	All Organisms → cellular organisms → Bacteria → Acidobacteria	1713	Open in IMG/M
3300006237\|Ga0097621_100743768	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300006893\|Ga0073928_10042854	All Organisms → cellular organisms → Bacteria → Acidobacteria	4161	Open in IMG/M
3300007982\|Ga0102924_1000072	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	114561	Open in IMG/M
3300009545\|Ga0105237_10121746	All Organisms → cellular organisms → Bacteria → Acidobacteria	2604	Open in IMG/M
3300010048\|Ga0126373_10299519	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1603	Open in IMG/M
3300010048\|Ga0126373_12736766	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300010358\|Ga0126370_10004042	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7210	Open in IMG/M
3300010361\|Ga0126378_10214493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2006	Open in IMG/M
3300010361\|Ga0126378_11117272	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300010376\|Ga0126381_100045069	All Organisms → cellular organisms → Bacteria	5367	Open in IMG/M
3300011271\|Ga0137393_11664672	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300012205\|Ga0137362_11454387	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300012349\|Ga0137387_11100833	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300013296\|Ga0157374_11294325	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300014501\|Ga0182024_10001989	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	51543	Open in IMG/M
3300014838\|Ga0182030_10228535	All Organisms → cellular organisms → Bacteria	2167	Open in IMG/M
3300015371\|Ga0132258_12294472	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1354	Open in IMG/M
3300016270\|Ga0182036_10120618	All Organisms → cellular organisms → Bacteria → Acidobacteria	1819	Open in IMG/M
3300017927\|Ga0187824_10109241	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	895	Open in IMG/M
3300017927\|Ga0187824_10328015	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300017937\|Ga0187809_10141499	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	828	Open in IMG/M
3300017943\|Ga0187819_10083871	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1902	Open in IMG/M
3300017959\|Ga0187779_10111171	All Organisms → cellular organisms → Bacteria → Acidobacteria	1659	Open in IMG/M
3300017970\|Ga0187783_10076193	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2469	Open in IMG/M
3300017970\|Ga0187783_10091641	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2239	Open in IMG/M
3300017972\|Ga0187781_10198974	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300017972\|Ga0187781_10219613	Not Available	1342	Open in IMG/M
3300017972\|Ga0187781_11026110	Not Available	603	Open in IMG/M
3300017973\|Ga0187780_10799912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300018062\|Ga0187784_10514997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	963	Open in IMG/M
3300018468\|Ga0066662_10705885	Not Available	963	Open in IMG/M
3300019786\|Ga0182025_1110685	Not Available	730	Open in IMG/M
3300020579\|Ga0210407_10076631	All Organisms → cellular organisms → Bacteria → Acidobacteria	2516	Open in IMG/M
3300021088\|Ga0210404_10061695	All Organisms → cellular organisms → Bacteria → Acidobacteria	1798	Open in IMG/M
3300021406\|Ga0210386_10454483	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300021407\|Ga0210383_10341553	Not Available	1290	Open in IMG/M
3300021420\|Ga0210394_10000010	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	490733	Open in IMG/M
3300021474\|Ga0210390_10342950	Not Available	1265	Open in IMG/M
3300021560\|Ga0126371_12371150	Not Available	641	Open in IMG/M
3300022557\|Ga0212123_10001635	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	60874	Open in IMG/M
3300022557\|Ga0212123_10007808	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	16753	Open in IMG/M
3300022722\|Ga0242657_1058989	All Organisms → cellular organisms → Bacteria → Acidobacteria	862	Open in IMG/M
3300025910\|Ga0207684_10022006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5444	Open in IMG/M
3300025914\|Ga0207671_10773877	Not Available	762	Open in IMG/M
3300025915\|Ga0207693_10456047	Not Available	999	Open in IMG/M
3300025928\|Ga0207700_11521221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300026291\|Ga0209890_10154731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300026308\|Ga0209265_1066102	Not Available	1080	Open in IMG/M
3300027117\|Ga0209732_1046070	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300027591\|Ga0209733_1101338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300027745\|Ga0209908_10037523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1019	Open in IMG/M
3300027826\|Ga0209060_10019604	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3582	Open in IMG/M
3300027842\|Ga0209580_10651192	Not Available	521	Open in IMG/M
3300027869\|Ga0209579_10045150	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2358	Open in IMG/M
3300027908\|Ga0209006_10029032	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5012	Open in IMG/M
3300028016\|Ga0265354_1012359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300028747\|Ga0302219_10065230	All Organisms → cellular organisms → Bacteria → Acidobacteria	1361	Open in IMG/M
3300028871\|Ga0302230_10159047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300030617\|Ga0311356_10010203	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10437	Open in IMG/M
3300030737\|Ga0302310_10539351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300031057\|Ga0170834_101364018	All Organisms → cellular organisms → Bacteria → Acidobacteria	1082	Open in IMG/M
3300031090\|Ga0265760_10045863	Not Available	1310	Open in IMG/M
3300031231\|Ga0170824_114399583	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1552	Open in IMG/M
3300031474\|Ga0170818_111750429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300031708\|Ga0310686_117739046	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300031715\|Ga0307476_10008159	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6443	Open in IMG/M
3300031718\|Ga0307474_10071628	All Organisms → cellular organisms → Bacteria	2573	Open in IMG/M
3300031823\|Ga0307478_10948634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300031823\|Ga0307478_11594298	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300031962\|Ga0307479_10707562	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300031962\|Ga0307479_11009689	Not Available	801	Open in IMG/M
3300032076\|Ga0306924_10381375	Not Available	1615	Open in IMG/M
3300032261\|Ga0306920_100280288	All Organisms → cellular organisms → Bacteria → Acidobacteria	2485	Open in IMG/M
3300032770\|Ga0335085_10049786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5672	Open in IMG/M
3300032828\|Ga0335080_10042719	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4993	Open in IMG/M
3300032829\|Ga0335070_10121085	All Organisms → cellular organisms → Bacteria → Acidobacteria	2705	Open in IMG/M
3300032893\|Ga0335069_10189077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2518	Open in IMG/M
3300032954\|Ga0335083_10023842	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6963	Open in IMG/M
3300033004\|Ga0335084_10210301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2019	Open in IMG/M
3300033134\|Ga0335073_10508976	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1372	Open in IMG/M
3300033134\|Ga0335073_11393474	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.64%
Host-Associated	Host-Associated	6.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.45%
Aquatic	Environmental → Aquatic	8.18%
Plants	Host-Associated → Plants	6.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.82%
Freshwater	Environmental → Aquatic → Freshwater	4.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.55%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.64%
Peat	Environmental → Terrestrial → Peat	3.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.91%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.55%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.73%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.45%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.55%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.27%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.36%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.55%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.64%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.91%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_01252350	2199352024	Soil	VSKQAVRLNFLQALLAIILGNIVYFVLVPSLPPIARHHPFRMDLGIIIDFTFCLLVYGLIRQTRKWR
JGIcombinedJ51221_104534252	3300003505	Forest Soil	VVSKPSVLTNLLPALLAIILGNVVYFLLIPSLPPVARHQPLHLDLGMILDFWLCLVAYGLIRTARRWR*
Ga0066395_100897281	3300004633	Tropical Forest Soil	VSKPSVLTNFNFLQALLAILLGNLVYFVLLPSLPPYFRHHRFQIDFGTLVDFYFCLVIYLLIRSIRKRF*
Ga0070683_1002236172	3300005329	Corn Rhizosphere	VSKLSVRLNFLQALLAIILGNVVYFALLPTLPLVARHRAFRVDLGMVLDFWMCLVIYGLIRTVRKWR*
Ga0070709_100058244	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MVSKPTVLINFLQALLAIILGNVVYFALVPSLPPVARHHPFHMDLGIVLDFSFCLVAYGLIRTARRWR*
Ga0070714_1006521611	3300005435	Agricultural Soil	VSKLSVRLNFLQALLAIILGNVMYFALLPTLPLVARHRAFRVDLGMVLDFWMCLVIYGLIRTVRKWR*
Ga0070713_1008473622	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VVSKLSVRLNFLQALLAIILGNVMYFALLPTLPLVARHRAFRVDLGMVLDFWMCLVIYGLIRTVRKWR*
Ga0070713_1011950271	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VSKLTVLVNLAQALLAIILGNLVYFLVLPSLPPVARHHPFRVDLGTALDFCFCLVIYAGIRTVRKSR*
Ga0070713_1021523071	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VVSKLSVRLNFLQALLAIILGNVVYFALLPTLPLVARHHPFRVDLGMVLDFWMCLVIYGLIRTVRKWR*
Ga0070706_1000583362	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VSKPTVLVNFLQALLAIILGNLLYFALVPSLPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTARKWR*
Ga0070698_1004812881	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LQALLAIILGNLLYFALVPSLPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTARKWR*
Ga0073909_103191821	3300005526	Surface Soil	MVSKPTVLINFLQALLAIILGNVVYFALVPSLPPVARHHPFHMDLGIVLDFSFCLVAYGLIR
Ga0073909_104323612	3300005526	Surface Soil	VLTNFLQALLAIILGNMVYFALVPSLPPVARHRPLHLDLGIILDFSFCLVAYGLIRTARRWR*
Ga0070741_103884322	3300005529	Surface Soil	MLQALLAIILGNLVYFLLLPSLPPIAKHHPFNLDLGMILDFGFCVVIYAFIRTLRKSR*
Ga0070734_104261091	3300005533	Surface Soil	MAVSKLSVLTNLNFLQALLAIILGNVVYFALLPFLPPYARHHRFQIDLGTLVDFSFCLVIYVLIRSARKWL*
Ga0070731_100105472	3300005538	Surface Soil	VSKQTVRVDFLQALLAIILGNVVYFALVRFLPPAAQHHRFQVDLGTAVDFFFCVVAYGLIRTVRKWR*
Ga0070731_107509272	3300005538	Surface Soil	PVRPPARPGGTLPVSKLSVRSNFLQALLAVLLGNILYFLLVPSLPPIARHRPMRIDLGMAVDFWLCLVAYGLIRTARRWR*
Ga0070732_106610452	3300005542	Surface Soil	VSKPLVLVNFLQALLAIILGNVAYFALLPSLPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTAR
Ga0066654_108156992	3300005587	Soil	VSKPSVMVNFLQALLGIILGNVAYFALQPYLPAAERHHLFQVDLGTLVDFSFCVVAYGLIRTMQRWR*
Ga0066903_1000768804	3300005764	Tropical Forest Soil	VSKPSVLTNFNFLQALLAILLGNLVYFVLLPSLPPYFRHHRFQIDFGTLVDFSFCLVIYLLIRSIRKRF*
Ga0066789_100863852	3300005994	Soil	MVSKPSVLINFLQALLAIILGNVVYFVLIPLLPPAAHHRPFHMDLGLILDFCFCLVAYGLIRSARRWR*
Ga0070717_1000229013	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VSKPSVRVNFLQALLAIILGNVVYFALVPSMPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTARKWR*
Ga0070717_100179072	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VSKPTVLMNFLQALLAIILGNVVYFVLAPSLPPVARHRPLRVDLGMVLDFWLCLVVWGLIRTVRKWR*
Ga0070717_102087912	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPSMVSKPTVLINFLQALLAIILGNVVYFALVPSLPPVARHHPFHMDLGIVLDFSFCLVAYGLIRTARRWR*
Ga0097621_1007437682	3300006237	Miscanthus Rhizosphere	MVSKPSVLTNFLQALLAIILGNVVYFALVPSLPPVARHRPLHLDLGIILDFSFCLVAYGLIRTARRWR*
Ga0079221_115807062	3300006804	Agricultural Soil	SVFVNFAQALLAIILGNIVYFLLLPSLPPAAHHHRFHIDLGLILDFAFCLMIYSVIMRLVRKWR*
Ga0073928_100428542	3300006893	Iron-Sulfur Acid Spring	VSKPTVLVNFLQALLAILLGNLVYFVLLPWLPEVARHRAFHLDLGTLLDFFFCVVAYGAIRTARNWR*
Ga0102924_100007290	3300007982	Iron-Sulfur Acid Spring	VSKPSVLVNFLQALLAIILGNVAYFALLPSLPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTARKWR*
Ga0105237_101217462	3300009545	Corn Rhizosphere	VRLNFLQALLAIILGNVMYFALLPTLPLVARHRAFRVDLGMVLDFWMCLVIYGLIRTVRKWR*
Ga0126373_102995192	3300010048	Tropical Forest Soil	VLTNFNFLQALLAILLGNLVYFVLLPSLPPYFRHHRFQIDFGTLVDFSFCLVIYLLIRSIRKRL*
Ga0126373_127367661	3300010048	Tropical Forest Soil	PSVLTNFNFLQALLAIILGNLVYFALLPSLPPYFRHHRFQIDFGTLVDFFFCVVIYFVIRSVRKWL*
Ga0126370_100040423	3300010358	Tropical Forest Soil	VLTNFNFLQALLAILLGNLVYFVLLPSLPPYFRHHRFQIDFGTLVDFSFCLVIYLLIRSIRKRF*
Ga0126378_102144932	3300010361	Tropical Forest Soil	VLSNFNFLQALLAILLGNLVYFVLLPSLPPYFRHHRFQIDFGTLVDFAFCLVIYLFIRSIRKRL*
Ga0126378_111172721	3300010361	Tropical Forest Soil	KPVRCIAVSKPSVLTNFNFLQALLAILLGNLVYFVLLPSLPPSFRHHRFQIDFGTLVDFSFCLVIYLLIRSIRKRF*
Ga0126381_1000450694	3300010376	Tropical Forest Soil	MNFLQALLAILLGNIVYFLLLPTLPPVAHHRPTRIDLGLLLDFVFCLVVYAFIRTARKWR
Ga0126381_1039441722	3300010376	Tropical Forest Soil	VETIPGIRVSNPSVFVNFAQALLAIILGNIVYFLLLPSLPISAHHHRFHMDLGLILDFGFCFIIYGVILRIARRWH*
Ga0137393_116646721	3300011271	Vadose Zone Soil	MPFMVSKPSVLINFLQALLAIILGNVVYFALVPSLPPVARHHPFHLDLGVILDFWLCLVAYGLIRTARKWR*
Ga0137362_114543872	3300012205	Vadose Zone Soil	MGSVNAPQTFGANVNTGHPETPFMVSKPSVLFNFLQALLAIILGNVVYFALVPSLPPVARHHPFHFDLGIILDFSFCLVAYGLIRTAKKWR*
Ga0137387_111008331	3300012349	Vadose Zone Soil	MPFMVSKPSVLINFLQALLAIILGNVVYFALVPSLPPVARHHPFHLDLGVILDFWLCLVAYGLIRTAR
Ga0157374_112943251	3300013296	Miscanthus Rhizosphere	HPRMPSMVSKPTVLINFLQALLAIILGNVVYFALVPSLPSVARHHPFHMDLGIVLDFSFCLVAYGLIRTARKWR*
Ga0157378_116204482	3300013297	Miscanthus Rhizosphere	VETIPGIQVSKASVFANFAQALLAIILGNIVYFLLLPSLPLFARHHRFHVDLVLVLDFGFCLIIYGLILRIARKGR*
Ga0182024_1000198939	3300014501	Permafrost	VSKPTVLVNFLQALLAIILGNVVYFALLPSLPPVARHHPFHLDVGMLLDFFFCVVAYGLIRTARKWR*
Ga0182030_102285353	3300014838	Bog	MVSKPSVLINFLQALLAIILGNVVYFLLIPSLPPVARHRPLHLDLGMVLDFWVCLVAYGLIRTARRWR*
Ga0132258_122944722	3300015371	Arabidopsis Rhizosphere	MVSKPTVLINFLQALLAIILGNVVYFALVPSLPPVARHHPFHMDLGIVLDFSFCLVAYGLIRTARKWR*
Ga0182036_101206181	3300016270	Soil	MRNLPETAGRIRVSKPSVFVNLLQAFVAIVIGNIAYFLLLPSLPPIARHHRFHLDLGTVVDFWCCLVAYGLIRTARRW
Ga0187824_101092412	3300017927	Freshwater Sediment	VSKPSVLFNFLQALLAIILGNVVYFALVPSLPPAAQHHRFRVDLGTLVDFFFCVVAYGLIRTARKWR
Ga0187824_103280152	3300017927	Freshwater Sediment	VVSKLSVRLNFLQALLAIILGNVVYFALLPTLPLVAQHRPFRVDLGMVLDFWMCLVIYGLIRTVRKWR
Ga0187809_101414992	3300017937	Freshwater Sediment	VSKPSVLFNLLQALLAIILGNVVYFLLWPSLPPVAHHHPFHLDLGVILDFCFCLLIYSFIRTAARRWR
Ga0187809_101426711	3300017937	Freshwater Sediment	VETIPGIRVSNPLVFANFAQALLAIILGNIVYFLLLPSLPIAAHHHRFHIDLGLILDFGFCFIIYGVILRIARRWH
Ga0187819_100838712	3300017943	Freshwater Sediment	VRCIAVSKPSVLTNFNFLQALLAIILGNLVYFALLPSLPPYFRHHRFQIDFGTLVDFFFCVVIYVLIRSIRKWL
Ga0187779_101111712	3300017959	Tropical Peatland	VSKPSVLTNFNFLQALLAIILGNLVYFALLPSLPPYFRHHRFQIDFGTLVDFAFCVVIYLLIRSIRKWL
Ga0187783_100761932	3300017970	Tropical Peatland	VSKPSVLTNFNFLQALLAIILGNLVYFALLPSLPPYFRHHRFQIDFGTLVDFSFCVVIYLFIRSIRKWL
Ga0187783_100916412	3300017970	Tropical Peatland	VSKPSVLTNFNFLQALLAIILGNLVYFALLPSLPPYFRHHRFQIDFGTLVDFSFCVVIYLLIRSVKKWL
Ga0187781_101989742	3300017972	Tropical Peatland	MVAGVAAAGLCGRPGRLAVSKTPVAVNFIEALLAIVLGNVVYFLLMPSLPLVARHHRFQVDLGTLVDFWLCLVAYGLIRTARRWK
Ga0187781_102196132	3300017972	Tropical Peatland	VSKPSVLTNFNFLQALLAIILGNLVYFALLPALPPYFRHHRFQIDFGTLVDFSFCVVIYLLIRNIRKRL
Ga0187781_110261101	3300017972	Tropical Peatland	VSKPSVLTNFNFLQALLAIILGNLVYFALLPSLPPYFRHHRFQIDFGTLVDFAFCGVIYLLIRSVKKWL
Ga0187780_107999121	3300017973	Tropical Peatland	VSKPSVLTNFNFLQALLAIILGNLVYFALLPSLPPYFRHHRFQIDFGTLVDFAFCVVIYLLIRSVKKWL
Ga0187784_105149972	3300018062	Tropical Peatland	MVAGVAAAGLCGRPGRLAVSKTPVAANFIEALLAIVLGNVVYFLLMPSLPLVARHHRFQVDLGTLVDFWLCLVAYGLIRTARRWK
Ga0066662_107058852	3300018468	Grasslands Soil	MVNFLQALLGIILGNVAYFALQPYLPAAERHHLFQVDLGTLVDFSFCVVAYGLIRTMQRW
Ga0182025_11106852	3300019786	Permafrost	VSKPTVLVNFLQALLAIILGNVVYFALLPSLPPVARHHPFHLDVGMLLDFFFCVVAYGLIRTARKWR
Ga0210407_100766312	3300020579	Soil	VVSKPSVLTNLLPALLAIILGNVVYFLLIPSLPPVARHQPLHLDLGMILDFWLCLVAYGLIRTARRWR
Ga0210404_100616952	3300021088	Soil	GHPRTLSVVSKPSVLTNLLPALLAIILGNVVYFLLIPSLPPVARHQPLHLDLGMILDFWLCLVAYGLIRTARRWR
Ga0210386_104544832	3300021406	Soil	MVLKPAASRVNKGHPTTLSVVSKPSVLTNLLPALLAIILGNVVYFLLIPSLPPVARHQPLHLDLGMILDFWLCLVAYGLIRTARRWR
Ga0210383_103415532	3300021407	Soil	VSKATVPVNFLQALLAIIAGNVAYFALLPSLPPVARHHPFRLDLGTLVDFFFCVVAYGLIRTARKWR
Ga0210394_10000010327	3300021420	Soil	VLINLLQALLAIILGNVVYFLLIPSLPPVARHQPLHLDLGIVLDFWLCLVAYGLIRTARRWR
Ga0210390_103429502	3300021474	Soil	VSKQTVRFDFLQALLAIILGNVVYFALVRFLPAAAQHHRFQVDLGTLVDFFFCVVAYGLIRTV
Ga0126371_123711502	3300021560	Tropical Forest Soil	VRCIAVSKPSVLTNFNFLQALLAILLGNLVYFVLLPSLPPSFRHHRFQIDFGTLVDFSFCLVIYLLIRSIRKRF
Ga0212123_1000163544	3300022557	Iron-Sulfur Acid Spring	VSKPSVLVNFLQALLAIILGNVAYFALLPSLPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTARKWR
Ga0212123_100078084	3300022557	Iron-Sulfur Acid Spring	VSKPTVLVNFLQALLAILLGNLVYFVLLPWLPEVARHRAFHLDLGTLLDFFFCVVAYGAIRTARNWR
Ga0242657_10589891	3300022722	Soil	VVSNPSVLINLLQALLAIILGNVVYFLLIPSLPPVARHQPLHLDLGIVLDFWLCLVAYGLIRTARRWR
Ga0207684_100220062	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VSKPTVLVNFLQALLAIILGNLLYFALVPSLPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTARKWR
Ga0207671_107738771	3300025914	Corn Rhizosphere	VVSKLSVRLNFLQALLAIILGNVMYFALLPTLPLVARHRAFRVDLGMVLEFWMCLVIYGLIR
Ga0207693_104560471	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VSKPSVRVNFLQALLAIILGNVVYFALVPSMPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTARKWR
Ga0207700_115212212	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RVSKLTVLVNLAQALLAIILGNLVYFLVLPSLPPVARHHPFRVDLGTALDFCFCLVIYAGIRTVRKSR
Ga0209890_101547311	3300026291	Soil	FLQALLAIILGNVVYFVLIPLLPPAAHHRPFHMDLGLILDFCFCLVAYGLIRSARRWR
Ga0209265_10661021	3300026308	Soil	VSKPSVMVNFLQALLGIILGNVAYFALQPYLPAAERHHLFQVDLGTLVDFSFCVVAYGLIRTMQRWR
Ga0209732_10460702	3300027117	Forest Soil	VSKSSVRANFLQTLLAIVLGNLVYFALIPSLPPVARHHPFQLDLGMVLDFSFCLVAYGLIRKARRWR
Ga0209733_11013382	3300027591	Forest Soil	VSKPKVLINLLQALLAIILGNVVYFALVPSLPPAAQHHPFQLDLGTLLDFFFCVVVYGLIRTARKWR
Ga0209908_100375232	3300027745	Thawing Permafrost	VSKPPVLVNFLQALLAIIVGNLAYFALLPSLPPVARHRLFRLDLGTLVDFFFCVVAYRLIRTVRKWR
Ga0209060_100196042	3300027826	Surface Soil	VSKLSVLTNLNFLQALLAIILGNVVYFALLPFLPPYARHHRFQIDLGTLVDFSFCLVIYVLIRSARKWL
Ga0209580_106511921	3300027842	Surface Soil	VSKPLVLVNFLQALLAIILGNVAYFALLPSLPPAAQHHRFRVDLGTAVDFFFCVVAYGLI
Ga0209579_100451502	3300027869	Surface Soil	VSKQTVRVDFLQALLAIILGNVVYFALVRFLPPAAQHHRFQVDLGTAVDFFFCVVAYGLIRTVRKWR
Ga0209006_100290323	3300027908	Forest Soil	VSKPTVLVNFLQALLAILLGNLAYFALLPWLPPVARHRPLHLDLGTLLDFFFCVVAYGVIRTARNWR
Ga0265354_10123591	3300028016	Rhizosphere	MVSKPSVLINFLQALLAIILGNVVYFALIPSLPPVARHRPLHLDLGMVLDFWLCLVVYGLIRTARKWR
Ga0302219_100652302	3300028747	Palsa	MGHPQMPFMVSKPPVLINFLQALLAIILGNVVYFALIPSLPPVARHRPLHLDLGMVLDFWLCLVVYGLIRTARKWR
Ga0302230_101590472	3300028871	Palsa	NFLQALLAIILGNVVYFALIPSLPPVARHRPLHLDLGMVLDFWLCLVVYGLIRTARKWR
Ga0311356_100102031	3300030617	Palsa	SKPPVLINFLQALLAIILGNVVYFALIPSLPPVARHRPLHLDLGMVLDFWLCLVVYGLIRTARKWR
Ga0302310_105393511	3300030737	Palsa	LLAIILGNVVYFALIPSLPPVARHRPLHLDLGMVLDFWLCLVVYGLIRTARKWR
Ga0170834_1013640182	3300031057	Forest Soil	MPFMVSKPSVLFNFLQALLAIILGNVVYFALVPSLPPVARHHPFHFDLGIILDFSFCLVAYGLIRTARKWR
Ga0265760_100458632	3300031090	Soil	MVSKPSVLINFLQALLAIILGNVVYFALIPSLPPVARHRPLHLDLGMVLDFWLCLVVY
Ga0170824_1143995832	3300031231	Forest Soil	MPFMVSKSPVLFNFLQALLAIILGNVAYFALVPSLPPVARHHPFHFDLGVILDFSFCLVAYGLIRTTRRWR
Ga0170818_1117504291	3300031474	Forest Soil	LNRGHPRMPFMVSKPSVLFNFLQALLAIILGNVAYFALVPSLPPVARHHPFHFDLGIILDFSFCLVAYGLIRTARKWR
Ga0310686_1177390462	3300031708	Soil	VVSNPSVLINLLQALLAIILGNVVYFLLIPSLPPVARHRPLHLDLGIVLDFWLCLVAYGLIRTVRRWR
Ga0307476_100081596	3300031715	Hardwood Forest Soil	THVNRGHPEKPVMVSKPSVLFNFLQALLAIILGNVVYFALVPSLPPVARHHPFHFDLGIILDFCFCLMAYGLIRTARRWR
Ga0307474_100716283	3300031718	Hardwood Forest Soil	VSKPLVLVNFLQALLAIILGNVAYFALLPSLPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTARKWR
Ga0307478_109486341	3300031823	Hardwood Forest Soil	TRYLCETRGSVAVSKPTVFTNFLQALLAILLGNVVYFALVPSLPPVARHRPLQVDLGMVLDFCFCLVAYGLIRTARKWR
Ga0307478_115942982	3300031823	Hardwood Forest Soil	MVSKPSVLFNFLQALLAIILGNVVYFALVPSLPPVARHHPFHFDLGIILDFCFCLMAYGLIRTARRWR
Ga0307479_107075621	3300031962	Hardwood Forest Soil	LCETRGSVAVSKPTVFTNFLQALLAILLGNVVYFALVPSLPPVARHRPLQVDLGMVLDFCFCLVAYGLIRTARKWR
Ga0307479_110096892	3300031962	Hardwood Forest Soil	VSKPLVLVNFLQALLAIILGNVAYFALLPSLPPAAQHHRFRVDLGTAVDFFICVVA
Ga0306924_103813752	3300032076	Soil	MRNLPETAGRIRVSKPSVFVNLLQAFVAIVIGNIAYFLLLPSLPPIARHHRFHLDLGTVVDFWCCLVAY
Ga0306920_1002802883	3300032261	Soil	MRNLPETAGRIRVSKPSVFVNLLQAFVAIVIGNIAYFLLLPSLPPIARHHRFHLDLGTVVDFWCCLVAYGLIRTARRWR
Ga0335085_100497863	3300032770	Soil	VVLVNLLQALLAIILGNLVYFLLLPSLPPAAQHHPFRIDLGTVVDFGFCLIIYTAIRKVRSWK
Ga0335079_107757922	3300032783	Soil	VSNPLVFVNFAQALLAIILGNIVYFLLLPSLPIAAHHHRFHMDLGLILDFGFCFIIYGVILRIARRRH
Ga0335080_100427193	3300032828	Soil	MVSKASVTVNLLQMLLAIILGNVVYFALMPSLPPVVHHHQFRLDMGTVVDFGFCLVIYGLIRTAHRWR
Ga0335070_101210853	3300032829	Soil	VINAAQVVLAVVVGNVVYFLLEPSLPAVAQHHFLHADIGILVDFWLCLVAYGLIRTARRW
Ga0335069_101890772	3300032893	Soil	VSKPSVLVNLFQALVAIVLGNVVYFLLLPSLPQIAQHRPFRLDLGMVVDFWLCLVAYGLIRT
Ga0335083_100238424	3300032954	Soil	VSKSLVLVNLLQALLAIILGNLVYFLLLPSLPPVAQHFRIDLGTVVDFGFCLLIYTAIRKVRSWK
Ga0335084_102103012	3300033004	Soil	VSKSLVLVNLLQALLAIILGNLVYFLLLPSLPPVAQHHPFRIDLGTVVDFGFCLLIYTAIRKVRSWK
Ga0335073_105089762	3300033134	Soil	VRVNFLQALLAILLGNLAYFALLPSLPAIARHRPLHIDLGTLIDFCFCVVAYGLIRTARKWR
Ga0335073_113934741	3300033134	Soil	KQSVLVNFIQALAAVILGNVAYFLLAPSFPPIARHHPFRVDLGMLVDFWLCLVAYGLIRTARRWR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087361

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences