Scaffold Ga0193694_1000002

Overview

Basic Information

• Taxon OID: 3300021415
• Scaffold ID: Ga0193694_1000002
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1397013
• Total Scaffold Genes: 1288
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 190 (14.75%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9137
  • Long. (^o): -106.8949
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004644	Metagenome / Metatranscriptome	429	Y
F005768	Metagenome / Metatranscriptome	391	Y
F010981	Metagenome / Metatranscriptome	296	Y
F011412	Metagenome	291	Y
F012591	Metagenome	279	Y
F012636	Metagenome / Metatranscriptome	279	Y
F016612	Metagenome / Metatranscriptome	246	Y
F028018	Metagenome	193	Y
F036756	Metagenome	169	Y
F079271	Metagenome	116	Y
F080182	Metagenome	115	N
F082850	Metagenome	113	N
F084787	Metagenome	112	N
F089774	Metagenome	108	N
F094028	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193694_10000021128	F012636	N/A	MILFTGTEAFNQQKQLKDLIGRWEIVGEQSDSASLEIIDSSTIILNYMGERKKIIEYKIDFQRSPIWFDFSTGDSSSTVMVKSLLEVMNDSMIKWQLFVDEDRTEHFSSTKGELFYLRKAKPAAITAMVNN
Ga0193694_10000021160	F079271	N/A	MKKTIFIISIAILVTASSCVTSLQPLVTYDTAIADNRLEGVWEQDGEKYVVQKVFNSDFYKKNQKDLEKSRKENNGQLSEKDKKDSVLFSKSYIIKYSKDGIQYLLFGNMIKLNGHLFMNFTPVDMTEIDTSNAEVEINLSDRINSHTIARVQFTNSNIMKLDFIDGGYLHDQIKAGHMKIKNETDELYDTFLITASTIELQQFLEKYGNDSRFFNKENTVTLNRKS
Ga0193694_10000021204	F005768	AGG	MNQTEQNPTFYQRIADEHVDYSEVYRTQETIQLNKRLRRTRNILLTCALAFVAGAGIFWIMPETSFTTKDFLVYLGLAAVMVLLSFYSNKQPFLSLVSALIICVGFWGFELFVNNLNELVIETSIHKLFIVSILVWCFHSSREAEIIRKELHFS
Ga0193694_10000021277	F080182	N/A	MHKKTLTTILSAVLLGSFFMPFFYWHSFEMSGFNFVLSEHIPSYKYFLLAIPLTTLFHLLSVLSQENNFYSRKLLSWIPLAALIAVFVLILAKEGSGDSFFNNGNIFSITGAGFWLALGFSLLLAYVNLKMRSKSYYI
Ga0193694_1000002153	F094028	AGTAG	MFEVLSLPICLKLPSCKREKDFSDNYRLNTCVTHRHHFDPDIMDQKYDHSGGKAVHRKSHGSNKNGR
Ga0193694_1000002202	F028018	AGG	LLQKLFSHTFAEVLFKNRYIHKCISAILLVILLLIHSIKLLHTHSGNSSFSNHICSGNCFEQNDNADPGQSASDCSICNYQLTKDADDLKDPAFCSPITQQMDLITRSISFHKFSHPSSLEDRGPPANIL
Ga0193694_1000002301	F082850	AGG	MKYFYSLLLLFVLVTACKQKILSGKALEDKLNKTMANYLHETLKPGTEVVIKDLVYYPEKMKNVYICTFTVQLKTATSDTTGTMMALIPNDFSKVTRTQ
Ga0193694_1000002308	F084787	N/A	MLLSIAPRKSIQVTKPKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF
Ga0193694_1000002315	F012591	N/A	MAIELYVDSLNKTGTVGITANESSVSYNLELLKGFTAAASGVFTAGRYFCIVWETSPASITFVDILKDPDVVDTIIYAPEVSESFREKFSSQLEIYNAGYESKKDEVKLIRGESPAKP
Ga0193694_1000002538	F016612	N/A	MQKKYLLRAALILLLITGSYLVLWSTTKTPSQKDACSESMEECYKNKDENDKSGEMIWETFSRQFISTSVIE
Ga0193694_1000002651	F004644	N/A	MTLSFSLLAVQSCNSDKTEKADEKTVSTTDVPAPVQTAFSAKYSTATEVKWEDAHENNVQTYKAKFLVNGKKMKAEFDANGGLVKEEEDN
Ga0193694_1000002652	F010981	N/A	MSTNLTLDEMILQYSENPFIDEKMFDLPSDIQQKQKVLTRLLNIASNLFNKAPVKELTSYKRRYEIKYGI
Ga0193694_1000002808	F036756	N/A	MKSIKFVFLKAIIIVFFTFCAGSSYSQNPSESFMKTEGANKVQFMGIENNFLVFDLLFSEVPAKGCTLKIMDNDGNIMFEESISERSFTRRYKVAKEETSRISFKALGKGFVFNQSFIIKKEETLVVTLE
Ga0193694_1000002810	F089774	N/A	MALDKNEKRLVEKLVEALTLIQADKQDIEIISETKKIDEDFLAKANQIFNETEACDVCRHAFHSWRNTLDDETLLSFIDDWINWKKQNIDLNPKARIVKMRKRL
Ga0193694_100000298	F011412	N/A	MKIIFLVLICFCFQFSFSQKLDINSLEKLLNASVRAADTLLKSFHFTLSDKEIAKGYSNYYYTSYEKQDLGKQLLRSVSFMDVYDGADTSRLVLYRTYYENEQEELKRQLLTNGYELFSSTGNNFIYKKGDHKITNKITLKTAKGSKPVTAYEFELGR