Metagenome Family F094028

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094028
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	54 residues
Representative Sequence	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRGGGKAV
Number of Associated Samples	88
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.04 %
% of genes near scaffold ends (potentially truncated)	47.17 %
% of genes from short scaffolds (< 2000 bps)	86.79 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.472 % of family members)
Environment Ontology (ENVO)	Unclassified (35.849 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.679 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.23% β-sheet: 0.00% Coil/Unstructured: 92.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02622	DUF179	35.85
PF00512	HisKA	13.21
PF02518	HATPase_c	7.55
PF06283	ThuA	6.60
PF02547	Queuosine_synth	3.77
PF15071	TMEM220	0.94
PF07995	GSDH	0.94
PF13287	Fn3_assoc	0.94
PF02823	ATP-synt_DE_N	0.94
PF02381	MraZ	0.94
PF13380	CoA_binding_2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	35.85
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	6.60
COG0809	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)	Translation, ribosomal structure and biogenesis [J]	3.77
COG0355	FoF1-type ATP synthase, epsilon subunit	Energy production and conversion [C]	0.94
COG2001	MraZ, DNA-binding transcriptional regulator and inhibitor of RsmH methyltransferase activity	Translation, ribosomal structure and biogenesis [J]	0.94
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	33.96 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	6.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	33.96 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	6.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	33.96 %
unclassified Sphingobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales	3.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
unclassified Chitinophagaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae	21.70 %
Sphingobacteriales bacterium 12-47-4	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium 12-47-4	3.77 %
Flavihumibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Flavihumibacter	0.94 %
Flavisolibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Flavisolibacter	0.94 %
Terrimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Chitinophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	21.70 %
Sphingobacteriales bacterium 12-47-4	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium 12-47-4	3.77 %
Flavihumibacter solisilvae	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Flavihumibacter → Flavihumibacter solisilvae	0.94 %
Flavisolibacter ginsengisoli	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Flavisolibacter → Flavisolibacter ginsengisoli	0.94 %
Terrimonas ferruginea	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → Terrimonas ferruginea	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000881\|JGI10215J12807_1378522	Not Available	544	Open in IMG/M
3300000956\|JGI10216J12902_100761844	Not Available	781	Open in IMG/M
3300002099\|JGI24808J26613_1004843	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	3565	Open in IMG/M
3300002099\|JGI24808J26613_1010231	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → Terrimonas ferruginea	1889	Open in IMG/M
3300004156\|Ga0062589_101456835	Not Available	671	Open in IMG/M
3300004157\|Ga0062590_102108408	Not Available	588	Open in IMG/M
3300004463\|Ga0063356_103140312	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	712	Open in IMG/M
3300005183\|Ga0068993_10043904	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	1273	Open in IMG/M
3300005289\|Ga0065704_10302045	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	883	Open in IMG/M
3300005290\|Ga0065712_10019915	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	2135	Open in IMG/M
3300005290\|Ga0065712_10560145	Not Available	612	Open in IMG/M
3300005294\|Ga0065705_10677370	Not Available	664	Open in IMG/M
3300005333\|Ga0070677_10217891	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	930	Open in IMG/M
3300005334\|Ga0068869_100057055	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2849	Open in IMG/M
3300005335\|Ga0070666_10988732	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	624	Open in IMG/M
3300005355\|Ga0070671_100426024	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	1137	Open in IMG/M
3300005355\|Ga0070671_102040128	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	511	Open in IMG/M
3300005356\|Ga0070674_100688690	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	873	Open in IMG/M
3300005364\|Ga0070673_101525011	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	631	Open in IMG/M
3300005444\|Ga0070694_100896805	Not Available	732	Open in IMG/M
3300005467\|Ga0070706_101992171	Not Available	526	Open in IMG/M
3300005539\|Ga0068853_100197966	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1828	Open in IMG/M
3300005566\|Ga0066693_10261551	Not Available	686	Open in IMG/M
3300005577\|Ga0068857_100289491	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1508	Open in IMG/M
3300005615\|Ga0070702_100427628	Not Available	955	Open in IMG/M
3300005617\|Ga0068859_100350742	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1570	Open in IMG/M
3300005617\|Ga0068859_101463863	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	754	Open in IMG/M
3300005618\|Ga0068864_100255433	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1628	Open in IMG/M
3300006046\|Ga0066652_100618424	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1024	Open in IMG/M
3300006237\|Ga0097621_100725405	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	917	Open in IMG/M
3300006844\|Ga0075428_101794335	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	639	Open in IMG/M
3300006845\|Ga0075421_100681615	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1197	Open in IMG/M
3300009094\|Ga0111539_12234435	Not Available	635	Open in IMG/M
3300009100\|Ga0075418_10182917	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	2231	Open in IMG/M
3300010403\|Ga0134123_11604191	Not Available	698	Open in IMG/M
3300011423\|Ga0137436_1202989	Not Available	522	Open in IMG/M
3300012469\|Ga0150984_100731733	Not Available	551	Open in IMG/M
3300012892\|Ga0157294_10275514	Not Available	528	Open in IMG/M
3300012893\|Ga0157284_10103682	Not Available	747	Open in IMG/M
3300012895\|Ga0157309_10028465	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1275	Open in IMG/M
3300012895\|Ga0157309_10087674	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	841	Open in IMG/M
3300012896\|Ga0157303_10062647	Not Available	801	Open in IMG/M
3300012896\|Ga0157303_10116370	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	671	Open in IMG/M
3300012898\|Ga0157293_10108010	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	728	Open in IMG/M
3300012898\|Ga0157293_10139725	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	672	Open in IMG/M
3300012900\|Ga0157292_10403266	Not Available	518	Open in IMG/M
3300012907\|Ga0157283_10157344	Not Available	676	Open in IMG/M
3300012910\|Ga0157308_10173368	Not Available	707	Open in IMG/M
3300012914\|Ga0157297_10005230	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2531	Open in IMG/M
3300012915\|Ga0157302_10345909	Not Available	594	Open in IMG/M
3300013306\|Ga0163162_10956805	Not Available	967	Open in IMG/M
3300014326\|Ga0157380_10557962	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1125	Open in IMG/M
3300015200\|Ga0173480_10384295	Not Available	810	Open in IMG/M
3300015371\|Ga0132258_13188982	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Flavihumibacter → Flavihumibacter solisilvae	1132	Open in IMG/M
3300015374\|Ga0132255_105597203	Not Available	532	Open in IMG/M
3300018081\|Ga0184625_10466385	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium 12-47-4	645	Open in IMG/M
3300018084\|Ga0184629_10664496	Not Available	527	Open in IMG/M
3300018469\|Ga0190270_10025937	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3725	Open in IMG/M
3300018476\|Ga0190274_10005441	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Flavisolibacter → Flavisolibacter ginsengisoli	7644	Open in IMG/M
3300018476\|Ga0190274_10234409	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1649	Open in IMG/M
3300018476\|Ga0190274_11466523	Not Available	773	Open in IMG/M
3300019361\|Ga0173482_10541221	Not Available	573	Open in IMG/M
3300019362\|Ga0173479_10040734	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1469	Open in IMG/M
3300019362\|Ga0173479_10880791	Not Available	504	Open in IMG/M
3300020000\|Ga0193692_1015834	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1821	Open in IMG/M
3300020000\|Ga0193692_1080881	Not Available	708	Open in IMG/M
3300020005\|Ga0193697_1002013	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	5551	Open in IMG/M
3300020020\|Ga0193738_1000216	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	40511	Open in IMG/M
3300021415\|Ga0193694_1000002	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1397013	Open in IMG/M
3300022756\|Ga0222622_10568534	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	816	Open in IMG/M
3300022756\|Ga0222622_10591934	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	800	Open in IMG/M
3300022756\|Ga0222622_10845696	Not Available	669	Open in IMG/M
3300022886\|Ga0247746_1006000	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2376	Open in IMG/M
3300022899\|Ga0247795_1006324	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1905	Open in IMG/M
3300022899\|Ga0247795_1007086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1795	Open in IMG/M
3300022917\|Ga0247777_1226734	Not Available	602	Open in IMG/M
3300023062\|Ga0247791_1026369	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	881	Open in IMG/M
3300023066\|Ga0247793_1093538	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium 12-47-4	522	Open in IMG/M
3300023077\|Ga0247802_1015797	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1030	Open in IMG/M
3300023078\|Ga0247756_1119345	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	522	Open in IMG/M
3300023260\|Ga0247798_1031809	Not Available	691	Open in IMG/M
3300023264\|Ga0247772_1031788	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1077	Open in IMG/M
3300024055\|Ga0247794_10008049	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2379	Open in IMG/M
3300024055\|Ga0247794_10147375	Not Available	733	Open in IMG/M
3300025580\|Ga0210138_1086543	Not Available	750	Open in IMG/M
3300025923\|Ga0207681_10904271	Not Available	739	Open in IMG/M
3300025930\|Ga0207701_10277670	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1458	Open in IMG/M
3300025934\|Ga0207686_10274628	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1241	Open in IMG/M
3300025961\|Ga0207712_10013154	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	5303	Open in IMG/M
3300025961\|Ga0207712_10627981	Not Available	932	Open in IMG/M
3300026088\|Ga0207641_10188736	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1893	Open in IMG/M
3300027526\|Ga0209968_1019853	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1084	Open in IMG/M
3300031538\|Ga0310888_10240262	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1012	Open in IMG/M
3300031538\|Ga0310888_10801324	Not Available	583	Open in IMG/M
3300031547\|Ga0310887_10155061	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1205	Open in IMG/M
3300031562\|Ga0310886_10605979	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium 12-47-4	673	Open in IMG/M
3300031854\|Ga0310904_10577098	Not Available	765	Open in IMG/M
3300031858\|Ga0310892_10051204	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2049	Open in IMG/M
3300031858\|Ga0310892_10581593	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium 12-47-4	756	Open in IMG/M
3300031892\|Ga0310893_10562462	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	518	Open in IMG/M
3300031908\|Ga0310900_11385832	Not Available	590	Open in IMG/M
3300031944\|Ga0310884_10494335	Not Available	717	Open in IMG/M
3300032157\|Ga0315912_10274250	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1328	Open in IMG/M
3300032179\|Ga0310889_10209310	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	905	Open in IMG/M
3300032205\|Ga0307472_101730747	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	619	Open in IMG/M
3300032211\|Ga0310896_10317817	Not Available	810	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.81%
Host-Associated	Host-Associated	30.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.26%
Plants	Host-Associated → Plants	30.19%
Aquatic	Environmental → Aquatic	7.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.15%
Sediment	Environmental → Aquatic → Sediment	5.66%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.83%
Marine	Environmental → Aquatic → Marine	1.89%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.55%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.72%
Loam	Environmental → Terrestrial → Soil → Loam	2.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.25%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.32%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300022917	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L154-409C-5	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300023066	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300023078	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L066-202C-4	Environmental	Open in IMG/M
3300023260	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6	Environmental	Open in IMG/M
3300023264	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L151-409C-6	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10215J12807_13785221	3300000881	Soil	LPVCLKLPSSKREKDFSNNYCINTPVTYRHHFDPNIVDQEYDR
JGI10216J12902_1007618441	3300000956	Soil	MVEVLSLPDCLKLPSCKREKDFSNNYSVDPCVPHRHYPDPDILDQKHDRGGGKAV*
JGI24808J26613_10048431	3300002099	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYCSNTCVPYRHHFDPDIMDQKYDRGGGKAV*
JGI24808J26613_10102312	3300002099	Soil	LPVCLKLPSCKREKDLSNNYRFNTSVTYRHHFDPDIVDQKYDRGGGKAVQ*
Ga0062589_1014568352	3300004156	Soil	MFEVLSLPDCFKLPSCKREKDFSNNYSLNTCVAYRHYFDPDIMDQKYDRSGGEAV*
Ga0062590_1021084082	3300004157	Soil	MFEVLSLRDCLKLPSCKREKDFSNNYCPNTCVTYRHHFDPDIMDQKYDRGGGK
Ga0063356_1031403121	3300004463	Arabidopsis Thaliana Rhizosphere	LPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRCGGKAVHRKDYGSNKDGG*
Ga0068993_100439042	3300005183	Natural And Restored Wetlands	MFEVLSLPDCLKLPSCKREKDFSNNYSFNTCVTHRHHFDSDIMDQKYDCGGGKAV*
Ga0065704_103020452	3300005289	Switchgrass Rhizosphere	VLSLPDCLKLPSCKREKDFSNNYCLNSSVPHWHHFDPNILDKKYDRGGGKAV*
Ga0065712_100199153	3300005290	Miscanthus Rhizosphere	MFEVLSLPDCSKLPSCKREKDFSNNYRLNTCVTYRHHFDPDIMDKKYDRGGGKTVQ*
Ga0065712_105601451	3300005290	Miscanthus Rhizosphere	LKLPSCKREKDFSNNYRLNTCVTHRHHFDPNIMDQKYDRCGGKAVH*
Ga0065705_106773701	3300005294	Switchgrass Rhizosphere	SLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFNPDIMDQKYDRCRGKAVH*
Ga0070677_102178911	3300005333	Miscanthus Rhizosphere	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRGGGKAVH*
Ga0068869_1000570553	3300005334	Miscanthus Rhizosphere	MFEVLSLPDCLKLPSCKREKDFSNNYCFNTCVPHRHHFDPDIMDQKYDRGGGKAVQ*
Ga0070666_109887321	3300005335	Switchgrass Rhizosphere	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKTVQRKSNSCYNNCRRGII*
Ga0070671_1004260242	3300005355	Switchgrass Rhizosphere	LPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKHDRRGGKSV*
Ga0070671_1020401282	3300005355	Switchgrass Rhizosphere	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQK
Ga0070674_1006886902	3300005356	Miscanthus Rhizosphere	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRGGGKTVQ*
Ga0070673_1015250112	3300005364	Switchgrass Rhizosphere	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKHDRRGGKSV*
Ga0070694_1008968052	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKAV*
Ga0070706_1019921712	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKSV*
Ga0068853_1001979662	3300005539	Corn Rhizosphere	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRCGGKAVH*
Ga0066693_102615512	3300005566	Soil	MFEVLSLPDCLKLPSCKCEKDLSDNYRLNTCVTHRHYFDPDIMDQEYDRG*
Ga0068857_1002894912	3300005577	Corn Rhizosphere	MFEVLSLPDCLKLPSCKCEKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKAVQ*
Ga0070702_1004276281	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPNIMDQKYDRRGRKAVQRKSNSSHNNCWRRI
Ga0068859_1003507422	3300005617	Switchgrass Rhizosphere	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRCGGKAVH*
Ga0068859_1014638632	3300005617	Switchgrass Rhizosphere	VLSLPDCLKLPSCKREKDFSNNYCFNTCVPHRHHFDPDIMDQKYDRGGGKAVQ*
Ga0068864_1002554332	3300005618	Switchgrass Rhizosphere	MFEVLSLPDCVKLPSCKREKDFSNNYCLNTCVTHWHHFDPDIVDQKYDRSGGKAV*
Ga0066652_1006184241	3300006046	Soil	MFEVLSLPVCLKLPSCKREKDLSDNYRLNTCVSHWHHFDSNIMDQKYDRGGGKAVQ*
Ga0097621_1007254051	3300006237	Miscanthus Rhizosphere	DCLKLPSCKREKDLSDNYRLNTCVTHRHYFDPNIMDQKHDRCRGKTV*
Ga0075428_1017943352	3300006844	Populus Rhizosphere	MFEVLSLPDCLKLPSCKREKDFSNNYCPNTSVTYRHYFDPDIMDQKHDRSGGKAV*
Ga0075421_1006816153	3300006845	Populus Rhizosphere	LPVCLKLPSCKREKDFSNNYRFNITVTHRHHFDPNIVDQKYDRGGG
Ga0111539_122344351	3300009094	Populus Rhizosphere	VCLKLPSSKREKDFSNNYCINTPVTYRHHFDPNIVDQEYDRGGGKTVQRKSNSGHKDGG*
Ga0075418_101829171	3300009100	Populus Rhizosphere	MIEVLSLPVCLKLPSCKREKDFSNNYRFNITVTHRHHFDPNIVDQKYDRGGGKAVQ*
Ga0134123_116041911	3300010403	Terrestrial Soil	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRCRGKA
Ga0137436_12029891	3300011423	Soil	DCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKSV*
Ga0150984_1007317332	3300012469	Avena Fatua Rhizosphere	LPSCKCEKDLSDNYRLNTCVTHWHYFDPDIVDQEYDRG*
Ga0157294_102755141	3300012892	Soil	LSLPVCLKLPSCKREKDLSDNYRLNTCFSHRHHFDPNIMDQKYDRGGRKAVQ*
Ga0157284_101036821	3300012893	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRCGGKA
Ga0157309_100284651	3300012895	Soil	RMFEVLSLPVCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGEAV*
Ga0157309_100876742	3300012895	Soil	RMFEVLSLPVCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPNIMDQKYDRGGRKAVQ*
Ga0157303_100626472	3300012896	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQK
Ga0157303_101163702	3300012896	Soil	CLKLPSCKREKDLSDNYRLNTCVSHRHHFDPNIMDQKYDRGGGKAV*
Ga0157293_101080102	3300012898	Soil	PSALKLPSCKREKDFSDNYRLNTCVTHRHHFDPDFMDQKYDRGGRKAV*
Ga0157293_101397251	3300012898	Soil	CLKLPSCKREKDLSDNYRLNTCVSHRHHFDPNIMDQKYDRGGRKAVQ*
Ga0157292_104032662	3300012900	Soil	VCLKLPSCKREKDLSDNYRLNTCVSHRHHFDPNIMDQKYDRGGGKAV*
Ga0157283_101573441	3300012907	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRCGGKAV
Ga0157308_101733682	3300012910	Soil	LPVCLKLPSGKREKDFSNNYSLNTIVTYRHHFDPDIVDQKYDRGRGKAV*
Ga0157297_100052303	3300012914	Soil	MFEVLSLPVCLKLPSCKREKDLSDNYRLNTCVSHRHHFDPNIMDQKYDRGGRKAVQ*
Ga0157302_103459091	3300012915	Soil	MFEVLSLPVCLKLPSRKREKDLSDKYRLNTCVSHRHHFDPNIMDQKYDRGGGKAV*
Ga0163162_109568051	3300013306	Switchgrass Rhizosphere	MFEVLSLPDCLKLPSCKCEKDLADNYRLNTCVTHRHHFDPDIMDQKYDRCGGKTI
Ga0157380_105579621	3300014326	Switchgrass Rhizosphere	DCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRGGGKTVQ*
Ga0173480_103842951	3300015200	Soil	LFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPNIMDQKYDRRGRKAVQRK
Ga0132258_131889822	3300015371	Arabidopsis Rhizosphere	MFEVLSLPVCLKLPSCKREKDFSNNYSFNTRVTHWHHFDPDIVDQEYDRGGGKAV*
Ga0132255_1055972031	3300015374	Arabidopsis Rhizosphere	DGKRMFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHYFDPNIMDQKHDRCRGKTV*
Ga0184625_104663852	3300018081	Groundwater Sediment	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRGGGKTVQ
Ga0184629_106644961	3300018084	Groundwater Sediment	MFEVLSLPVCLKLPSCKREKDFPDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKTVQ
Ga0190270_100259372	3300018469	Soil	MFEVLSLPVCLKLPSCKREKDLSDNYRLNTCVTNRHHFDPNIMDQKYDRGGGKTV
Ga0190274_100054414	3300018476	Soil	MFEVLSLPVCLKLPSCKREKDFSDNYRLNTCVTHRHHFDPNIMDQKYDRCGGKAVQ
Ga0190274_102344092	3300018476	Soil	MFEVLSLPVCLKLPSCKREKDFSNNYCFNTCVTHRHRFDPNIMDQKYDRGGGKSV
Ga0190274_114665232	3300018476	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDILDQKYDHSGGKAVHRKSH
Ga0173482_105412211	3300019361	Soil	MFEVLSLPDCLKLPSCKREKDLSNNYRLNTFVTHWHYFDPNILDQKHDRSVGKAVQRKSYSRHHNCWR
Ga0173479_100407341	3300019362	Soil	MFEVLSLPVCLKLPSCKREKDLSDNYRLNTCVSHRHHFDPNIMDQKYDRGGRKAVQ
Ga0173479_108807912	3300019362	Soil	LPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDKKYDRGGGKTVQ
Ga0193692_10158343	3300020000	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRGGGKPVQGKSYDSNKNGGGRVI
Ga0193692_10808812	3300020000	Soil	MIEVLSLPDCLKLPSCKREKDFSNNYCLNTCVTYRHHPDPNIMDQKYD
Ga0193697_10020136	3300020005	Soil	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRCRGKAFQRKCN
Ga0193738_100021623	3300020020	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIVDQKYDRGGGKAV
Ga0193694_1000002153	3300021415	Soil	MFEVLSLPICLKLPSCKREKDFSDNYRLNTCVTHRHHFDPDIMDQKYDHSGGKAVHRKSHGSNKNGR
Ga0222622_105685341	3300022756	Groundwater Sediment	VLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRCGGKAVH
Ga0222622_105919342	3300022756	Groundwater Sediment	SLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDKKYDRGGGKTVQ
Ga0222622_108456961	3300022756	Groundwater Sediment	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFNPDIMDQKYDRC
Ga0247746_10060003	3300022886	Soil	LPSFKREKDFSNNYCPNTCVTYRHHFDPDIMDQKYDRGGGKAV
Ga0247795_10063242	3300022899	Soil	MFEVLSLPDCFKLPSCKREKDFSNNYSLNTCVAYRHYFDPDIMDQKYDRSGGEAV
Ga0247795_10070863	3300022899	Soil	MFEVLSLRDCLKLPSCKREKDFSNNYCPNTCVTYRHHFDPDIMDQKYDRGGGKAV
Ga0247777_12267341	3300022917	Plant Litter	CLKLPSCKREKDLSDNYRLNTCVSHRHHFDPNIMDQKYDRGGGKAV
Ga0247791_10263692	3300023062	Soil	MFEVLSLPVCLKLPSCKREKDLSDNYRLNTCVSHRHHFDPNIMDQKYDRGGGKAVQ
Ga0247793_10935382	3300023066	Soil	MFEVLSLPVCLKLPSCKREKDLSDNYRLNTCVSHWHHFDPNIMDQKYDRGGRKAVQ
Ga0247802_10157971	3300023077	Soil	MFEVLSLRDCLKLPSCKREKDFSNNYCPNTCVTYRHHFDPDIMDQKYDRGRGKAV
Ga0247756_11193452	3300023078	Plant Litter	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFNPDIMDQKYDR
Ga0247798_10318091	3300023260	Soil	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVSHRHHFDPNIMDQKYDRGGRKAVQ
Ga0247772_10317881	3300023264	Plant Litter	MFEVLSLPVCLKLPSCKREKDLSDNYRLNTCVSHWHHFDPNIMDQKYDRGGRKTVQ
Ga0247794_100080493	3300024055	Soil	MFEVLSLPDCFKLPSCKREKDFSNNYSLNTCVTYRHYFDPDIMDQKYDRGGGKAV
Ga0247794_101473751	3300024055	Soil	MFEVLSLRDCLKLPSCKREKDFSNNYCPNTCVTYRHHFDPDIMDQKYDR
Ga0210138_10865431	3300025580	Natural And Restored Wetlands	MFEVLSLPDCLKLPSCKREKDFSNNYSFNTCVTHRHHFDSDIMDQKYDCGGGKAV
Ga0207681_109042712	3300025923	Switchgrass Rhizosphere	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRCRG
Ga0207701_102776701	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	PDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRCRGKAFQRKCN
Ga0207686_102746281	3300025934	Miscanthus Rhizosphere	VLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHYFDPNIMDQKHDRCRGKTV
Ga0207712_100131543	3300025961	Switchgrass Rhizosphere	MVEVLSLPDCLKLPSCKREKDFSNNYSLNSSVTHRHHFDPNIMDKKYDRR
Ga0207712_106279812	3300025961	Switchgrass Rhizosphere	MFEVLSLPDCVKLPSCKREKDFSNNYCLNTCVTHWHHFDPDIVDQKYDRSGGKAV
Ga0207641_101887362	3300026088	Switchgrass Rhizosphere	MFEVLSLPDCVKLPSCKREKDFSNNYCLNTCVTHWHHFDPDIVDQKYDRGGGKAV
Ga0209968_10198531	3300027526	Arabidopsis Thaliana Rhizosphere	MFEVLSLPVCLKLPSCKREKDFSNNYCINTSVTHRHHFDPNIVDQKYDRGGRKAV
Ga0310888_102402622	3300031538	Soil	SKRMFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKAV
Ga0310888_108013242	3300031538	Soil	MFEVLSLPDCLKLPSCKREKDLSNNYCPNTCVTYRHHFDPDILDQKHDCRGGKAV
Ga0310887_101550612	3300031547	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYSFNTRVAHRHHFDPDIVDQKYDRGGRKAV
Ga0310886_106059792	3300031562	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYCPNTSVTYRHYFDPDIMDQKHDRSGGKAV
Ga0310904_105770982	3300031854	Soil	MFEVLSLPDCLKLPSCKREKDFSNNYRLNTCVTHRHHFDPDIMDQKYDRGGGKAV
Ga0310892_100512042	3300031858	Soil	MIEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKAV
Ga0310892_105815932	3300031858	Soil	MFEVLSLPDCLKLPSCKREKDLSNNYSVDPCVPHRHYPDPNILDQKHDRGGGKAV
Ga0310893_105624621	3300031892	Soil	MFEVLSLPDCVKLPSCKREKDFSNNYCLNTCVTHWHHFDPDIVDQK
Ga0310900_113858322	3300031908	Soil	RMFEVLSLPDCLKLPSCKREKDLSNNYSVDPCVPHRHYPDPNILDQKHDRGGGKAV
Ga0310884_104943352	3300031944	Soil	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKAV
Ga0315912_102742501	3300032157	Soil	LPVCLKLPSCKREKDFSNNYSLNTIVTYRHHFDPNIVDQKYDRGGGKAVQRKNN
Ga0310889_102093101	3300032179	Soil	KLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRGGGKAV
Ga0307472_1017307472	3300032205	Hardwood Forest Soil	MFEVLSLPVCLKLPSCKREKDFSDNYSLNTCVTHRHHFDPDILDQKYDRGGGKAV
Ga0310896_103178171	3300032211	Soil	MFEVLSLPDCLKLPSCKREKDLSDNYRLNTCVTHRHHFDPDIMDQKYDRCGGKAV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094028

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences