NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F084787

Metagenome Family F084787

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F084787
Family Type Metagenome
Number of Sequences 112
Average Sequence Length 102 residues
Representative Sequence MFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF
Number of Associated Samples 94
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 18.02 %
% of genes near scaffold ends (potentially truncated) 33.93 %
% of genes from short scaffolds (< 2000 bps) 80.36 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (72.321 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(29.464 % of family members)
Environment Ontology (ENVO) Unclassified
(30.357 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(41.071 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.
1JGI10216J12902_1056175231
2JGI24751J29686_101144272
3soilL1_100671162
4soilL2_103229382
5Ga0062593_1004375693
6Ga0062593_1016702361
7Ga0062593_1016925742
8Ga0062589_1002244073
9Ga0062590_1001344622
10Ga0062590_1009104472
11Ga0062595_1003562591
12Ga0062592_1026929001
13Ga0062383_100145823
14Ga0062380_100519722
15Ga0062378_100565161
16Ga0062381_102037691
17Ga0062594_1006918982
18Ga0065704_102616692
19Ga0065704_102787992
20Ga0065704_105461771
21Ga0065712_100505211
22Ga0065712_101634222
23Ga0065715_101040832
24Ga0065705_103468841
25Ga0065705_104615012
26Ga0065707_105430702
27Ga0070676_102562502
28Ga0070683_1010121372
29Ga0070674_1004610972
30Ga0070700_1004869001
31Ga0068867_1009594461
32Ga0070707_1011127482
33Ga0068864_1004682312
34Ga0068870_104119102
35Ga0070715_103131912
36Ga0075428_1000595022
37Ga0075431_1000603624
38Ga0075429_1008931471
39Ga0079218_100517723
40Ga0079218_101035282
41Ga0111539_107377031
42Ga0105249_100064323
43Ga0126307_1000139114
44Ga0126307_104970442
45Ga0126305_100013245
46Ga0126304_101756222
47Ga0126304_106013121
48Ga0126311_100245795
49Ga0134127_104056522
50Ga0137432_10160253
51Ga0137437_13148181
52Ga0157216_104039831
53Ga0157281_10018092
54Ga0157294_100831852
55Ga0157284_100032273
56Ga0157284_101005791
57Ga0157303_100098833
58Ga0157299_100062851
59Ga0157288_100516062
60Ga0157289_104054541
61Ga0157296_102957561
62Ga0157286_101659051
63Ga0157306_101779461
64Ga0157298_100401932
65Ga0164305_109301771
66Ga0180083_10211132
67Ga0173480_101823862
68Ga0173480_103920191
69Ga0190266_104262823
70Ga0184628_106505751
71Ga0184628_106605211
72Ga0184629_106637801
73Ga0190274_107240222
74Ga0190274_115039541
75Ga0190271_100454933
76Ga0173481_101298981
77Ga0173482_100222343
78Ga0173482_104524642
79Ga0173479_101656561
80Ga0173479_102083261
81Ga0193741_10134993
82Ga0193692_10450332
83Ga0193692_10699332
84Ga0193738_10008447
85Ga0210380_101613972
86Ga0193706_10112802
87Ga0193694_1000002308
88Ga0222622_100431121
89Ga0247745_10988391
90Ga0247756_10517731
91Ga0247794_101540821
92Ga0207697_100933842
93Ga0207645_104570852
94Ga0207643_108168371
95Ga0207681_107756981
96Ga0207712_100287936
97Ga0207648_117786561
98Ga0207676_102980771
99Ga0256865_10226202
100Ga0209682_101207891
101Ga0209481_100033916
102Ga0209486_100277283
103Ga0207428_100057216
104Ga0307500_101645902
105Ga0310887_106985391
106Ga0310813_109495662
107Ga0310900_103904402
108Ga0310901_104174252
109Ga0310906_104720952
110Ga0310906_104812452
111Ga0364945_0174382_2_289
112Ga0364931_0090789_204_515
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 53.85%    Coil/Unstructured: 46.15%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100MFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNFSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
73.2%26.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Wetland Sediment
Soil
Groundwater Sediment
Groundwater Sediment
Soil
Terrestrial Soil
Serpentine Soil
Glacier Forefield Soil
Switchgrass Rhizosphere
Soil
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Plant Litter
Sediment
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
4.5%29.5%5.4%8.0%4.5%3.6%5.4%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10561752313300000956SoilMFLSIAPRKSIQVTKANPTISVGSNSYLSVRGDGNNPKVILTKGKENGHMLLIESANGLPFRMVDDWQKNKTQLNGNITMKGSSTLLLVWSGLRWVQISY
JGI24751J29686_1011442723300002459Corn, Switchgrass And Miscanthus RhizosphereMLSIGPRKSVQVTKANPTINVGDSSYLSVRGXGNNPKVILSRGKENGHLLLIESALGLPFTMVDNVSTHRSELGASSRKMKGADELLLVWSGTRWVEISYSKNS*
soilL1_1006711623300003267Sugarcane Root And Bulk SoilMSQQNESFMFLSIAPRKSIQVTKAKPTITVGDNNYLSVRGDGTNPKVILTRGKENGHILLIESALGLPFTMVDNVSKHRTELNGNITMKGPSTLLLVWSGTRWVQISYSKNF*
soilL2_1032293823300003319Sugarcane Root And Bulk SoilMLLSLAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGASTLLLVWSGSRWVQIAYSKNF*
Ga0062593_10043756933300004114SoilMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0062593_10167023613300004114SoilMRMLSIGPRKSVQVTKTNRTITVGDSSYLSVRGDGNNPRVILTRGKENGHLLLIESALGLPFTMVDNVPTHRTELSGTRTMKGADELLLVWSGLRWVQVSFSKNH*
Ga0062593_10169257423300004114SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLLVRGDGNNPKVILTRGKEYGHILLIECAMGLPFTMVDNVAKHRTDLQGNINMKGPSTLLLVWSGTRWV
Ga0062589_10022440733300004156SoilMLSIGPRKSVKVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVSTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS*
Ga0062590_10013446223300004157SoilMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESAPGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0062590_10091044723300004157SoilMRMLSIGPRKSVQVTKTNRTITVGDSSYLSVRGDGNNPRVILTRGKENGHLLLIESALGLPFTMVDNVPTHRTELSGTRTMKGADELLLVWSGLRWVQV
Ga0062595_10035625913300004479SoilMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVW
Ga0062592_10269290013300004480SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVSTHRTELNGNITMKGPSTLLLVWSGTRWVQISYSKNF*
Ga0062383_1001458233300004778Wetland SedimentMLLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGRENGHILLIESAVGLAFTMVDNVPKHRTELSGNITMKGASTLLLVWSGSRWVQISYSKNF*
Ga0062380_1005197223300004779Wetland SedimentFFISTISTFSLQKILIMLLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGRENGHILLIESAVGLAFTMVDNVPKHRTELSGNITMKGASTLLLVWSGSRWVQISYSKNF
Ga0062378_1005651613300004780Wetland SedimentVGDNSYLSVRGDGNNPKVILTRGRENGHILLIESAVGLAFTMVDNVPKHRTELSGNITMKGASTLLLVWSGSRWVQISYSKNF*
Ga0062381_1020376913300004808Wetland SedimentMLLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGRENGHILLIESAVGLAFTMVDNVPKHRTELSGNITMKGASTLLLVWSG
Ga0062594_10069189823300005093SoilRKSVKVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVSTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS*
Ga0065704_1026166923300005289Switchgrass RhizosphereMLSIGPRKSVKVTKTNRTIVVGDNSYLSVSGDGTSPRVILTRGKENGHLLLIECSLAPGFTMVDNVNTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSSNH*
Ga0065704_1027879923300005289Switchgrass RhizosphereMLSIGPRRSVKVTKTNRTITVGDSSYLSVSGDGTNPRVVLTRGKENGHLLLIECSLALGFTMVDNLPIHHTELSATRKMKGGDEMLLVWSGTRWVQVSFSKNS*
Ga0065704_1054617713300005289Switchgrass RhizosphereMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQI
Ga0065712_1005052113300005290Miscanthus RhizosphereMLSIGPRKSVKVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVXTHXTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS*
Ga0065712_1016342223300005290Miscanthus RhizosphereMLSIGPRKSVQVTKANPTINVGDSSYLSVRGDGNNPKVILSRGKENGHLLLIESALGLPFTMVDNVSTHRSELGASSRKMKGADELLLVWSGTRWVEISYSKNS*
Ga0065715_1010408323300005293Miscanthus RhizosphereMLSIGPRKSVKVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVTTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS*
Ga0065705_1034688413300005294Switchgrass RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLPFTMVDNVSKHRTELNGNIKMNGPSTLLLVWSGLRWVQISYSKNF*
Ga0065705_1046150123300005294Switchgrass RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVATHRTELNGNIKMNGPSTLLLVWSGTRWVQISYSKNF*
Ga0065707_1054307023300005295Switchgrass RhizosphereFTMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESAPGLAFTMVDNVPKQRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0070676_1025625023300005328Miscanthus RhizosphereMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVSKHRTELSGNITMKGASTLLLVWSGSRWVQISHSKNF*
Ga0070683_10101213723300005329Corn RhizosphereMLSIGPRRSVQVTKTSPSINVGDSSYLSVRGDGNNPKVILSRGKENGHLLLIESALGLPFTMVDNVNTHRTELGASSRKMKGADELLLVWSGTRWVEISFAKNS*
Ga0070674_10046109723300005356Miscanthus RhizosphereTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVSTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS*
Ga0070700_10048690013300005441Corn, Switchgrass And Miscanthus RhizosphereMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLSFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0068867_10095944613300005459Miscanthus RhizosphereMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVSKHRTELSGNITMKGASTLLLVWSGSRW
Ga0070707_10111274823300005468Corn, Switchgrass And Miscanthus RhizosphereITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVTTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS*
Ga0068864_10046823123300005618Switchgrass RhizosphereMLSIGPRKSVQVTKANPTINVGDSSYLSVRGDGNNPKVILSRGKENGHLLLIESALGLPFTMVDNVSTHRSELGASSRKMKGADELLL
Ga0068870_1041191023300005840Miscanthus RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLLVRGDGNNPKVILTRGKEYGHILLIECAMGLPFTMVDNVAKHRTDLQGNITMKGPSTLLLVWSGTRWVQISYSKNF*
Ga0070715_1031319123300006163Corn, Switchgrass And Miscanthus RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELNGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0075428_10005950223300006844Populus RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESAVGHAFTMVDNVAKHRTELSGNITMKGASTLLLVWSGLRWVQISHSKNF*
Ga0075431_10006036243300006847Populus RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESAVGHAFTMVDNVAKHRTELNGNITMKGASTLLLVWSGLRWVQISHSKNF*
Ga0075429_10089314713300006880Populus RhizosphereMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLSFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNV*
Ga0079218_1005177233300007004Agricultural SoilMFLSIAPRKSIQVTKAKPTITVGDISYLSVRGDGNNPKVILTRGKENGHILLIESANGLPFTMVDNRTKHRTELNGNIKMNGSSTLLLVWSGTRWVQISYSKNF*
Ga0079218_1010352823300007004Agricultural SoilMYLSIAPRKSIQVTKAKPTITIGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVSKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0111539_1073770313300009094Populus RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLLVRGDGNNPKVILTRGKEYGHILLIECAMGLPFTMVDNVAKHRTDLQGNITMKGPSTLLLVWSGTRW
Ga0105249_1000643233300009553Switchgrass RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVAKHRTELNGNITMKGPSTLLLVWSGLRWVQISYSKNF*
Ga0126307_10001391143300009789Serpentine SoilMLSIGPRRSVQVTKTQFTITVGDSSYLSVRGDGTNPKVILTRGKENGHLLLIESAIGLPFTMVDNVPTHRTELGAASRKMKGSDELLLVWSGTRWVEVSFSKNW*
Ga0126307_1049704423300009789Serpentine SoilMLLSIAPRKSIQVTQAKPTITVGDNSYLSVRGDGTNPKVILTRGRENGHILLIESALGLAFTMVDNVAKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0126305_1000132453300010036Serpentine SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVAKHRTELNGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0126304_1017562223300010037Serpentine SoilMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0126304_1060131213300010037Serpentine SoilMLSIGPRKSVQVTKANPTISVGDSSYLSVRGDGNNPKVILSRGKENGHLLLIESALGLPFTMVDNVSTHRTELSASSRKMKGADELLLVWSGTRW
Ga0126311_1002457953300010045Serpentine SoilMLSIGPRKSVQVTKANPTISVGDSSYLSVRGDGNNPKVILSRGKENGHLLLIESALGLPFTMVDNVSTHRTELSASSRKMKGADELLLVWSGTRWVEVSFSKNS*
Ga0134127_1040565223300010399Terrestrial SoilMFLSIAPRKSIQVTQSKPTVTVGDNSYLSLRGDGTNPKVILTRGRENGHILLIESAVGHAFTMVDNVPKHRTELSGNITMKGASTLLLVWSGTRWVQISHSKNF*
Ga0137432_101602533300011439SoilMRLIAFSRQSAAHIKTSLHYVPMLSIGPRKSVQVTKTNRTITVGDNSYLSVRGDGTNPRVILTRGRENGHLLLIECSLGLPFTMVDNVPVHRTELSATRTMKGADELLLVWSGLRWVQVSFSKNH*
Ga0137437_131481813300011442SoilMLSIGPRKSVTVTKTNRTITVGDSSYLSVSGDGTNPRVVLTRGRENGHLLLIECSLALGFTMVDNLPIHHTELSATRKMKGGDEMLLVWSGSRWVQVSFSKNS*
Ga0157216_1040398313300012668Glacier Forefield SoilFNKQKSFIMFLSIAPRKSIQVTKAKPTITVGENSYLSVRGDGNNPKVILTRGKENGHILLIESAMGLPFTMVDNVPTHRTELNGNIKMNGPSTLLLVWSGSRWVQISYSKNF*
Ga0157281_100180923300012883SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGRENGHILLIESALGLPFTMVDNVATHRTELNGNIKMNGPSTLLLVWSGTRWVQISYSKNF*
Ga0157294_1008318523300012892SoilMLSIGPRKSVTVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVSTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS*
Ga0157284_1000322733300012893SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVAKHHTELNGNITMKGPSTLLLVWSGTRWVQISYSKNF*
Ga0157284_1010057913300012893SoilMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHIRLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0157303_1000988333300012896SoilTFRKQKSFTMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVAKHHTELNGNITMKGPSTLLLVWSGTRWVQISYSKNF*
Ga0157299_1000628513300012899SoilIGPRKSVKVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVSTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS*
Ga0157288_1005160623300012901SoilMTGTISTFRKQKSFTMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVAKHHTELNGNITMKGPSTLLLVWSGTRWVH
Ga0157289_1040545413300012903SoilQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF*
Ga0157296_1029575613300012905SoilKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVAKHHTELNGNITMKGPSTLLLVWSGTRWVQISYSKNF*
Ga0157286_1016590513300012908SoilMTGTISTFRKQKSFTMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVAKHHTELNGNITMKGPSTLLLVWSGTRWVQISYSKNF*
Ga0157306_1017794613300012912SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVAKHHTELNGNITMKGPS
Ga0157298_1004019323300012913SoilMTGTISTFRKQKSFTMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVATHRTELNGNIKMNGPSTLLLVWSGTRWVQISYSKNF*
Ga0164305_1093017713300012989SoilMYLSIAPRKSILVTTEKRTITVGENSYLSVMADSTKKKVILTKGKAKGHMLLIESANGHAFRMVDNVHTHRTELNANYTMKGASTLLLVWSGTRWVQISYSKNF*
Ga0180083_102111323300014875SoilMLSIGPRKSVQVTKTNRTITVGDNSYLSVRGDGTNPRVILTRGRENGHLLLIECSLGLPFTMVDNVPVHRTELSATRTMKGADELLLVWSGLRWVQVSFSKNH*
Ga0173480_1018238623300015200SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLLVRGDGNNPKVILTRGKEYGHILLIECAMGLPFTMVDNVAKHRTDLQGNINMKGPSTLLLVWSGTRWVQISYSKNF*
Ga0173480_1039201913300015200SoilITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVATHRTELNGNIKMNGPSTLLLVWSGTRWVQISYSKNF*
Ga0190266_1042628233300017965SoilQVTKANPTITVGSNSYLSVRGDGNNPKVILTKGKENGHMLLIESANGLPFRMVDDWQKNKTQLNGNITMKGSSTLLLVWSGLRWVQISYSKNF
Ga0184628_1065057513300018083Groundwater SedimentMLSIGPRKSVTVTKTNRTITVGDSSYLSVSGDGTNPRVVLTRGRENGHLLLIECLLALGFTMVDNLPIHRTELSATRKMKGGDEMLLVWSGTRWVQVSFSKNS
Ga0184628_1066052113300018083Groundwater SedimentKAKPTITVGDNSYLLVRGDGNNPKVILTRGKEYGHILLIECAMGLPFTMVDNVAKHRTDLQGNITMKGPSTLLLVWSGTRWVQISYSKNF
Ga0184629_1066378013300018084Groundwater SedimentRDGSHIQRRGIKTSLHYVPMLSISPRKSVQVTKTNRTITVGDNSYLSVRGDGTNPRVILTRGRENGHLLLIECSLGLPFTMVDNVPVHRTELSATRTMKGADELLLVWSGLRWVQVSFSKNH
Ga0190274_1072402223300018476SoilMFLSIAPRKSIQVTKANPTITVGSNSYLSVRGDGNNPKVILTKGKENGHMLLIESANGLPFRMVDDWQKNKTQLNGNITMKGSSTLLLVWSGLRWVQISYSKNF
Ga0190274_1150395413300018476SoilMLLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGASTLLLVWSGSRWVQISYSKNF
Ga0190271_1004549333300018481SoilMFLSIAPRKSIQVTKAKPTITVGDISYLSVRGDGNNPKVILTRGKENGHILLIESANGLPFTMVDNRTKHRTELNGNIKMNGSSTLLLVWSGTRWVQISYSKNF
Ga0173481_1012989813300019356SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVAKHHTELNGNITMKGPSTLLLVWSGTRWVQISYSKNF
Ga0173482_1002223433300019361SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLLVRGDGNNPKVILTRGKEYGHILLIECAMGLPFTMVDNVAKHRTDLQGNITMKGPSTLLLVWSGTRWVQISYSKNF
Ga0173482_1045246423300019361SoilMLSIGPRKSVKVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVSTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS
Ga0173479_1016565613300019362SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVATHRTELNGNIKMNGPSTLLLVWSGTRWVQISYSKNF
Ga0173479_1020832613300019362SoilMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF
Ga0193741_101349933300019884SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESAMGLPFTMVDNVSKHRTELNGNIKMNGPSTLLLVWSGLRWVQISYSKNF
Ga0193692_104503323300020000SoilMYLSLAPRKSIQVTKSNPTIAVGSNSYLSVRGDGNNPKVILTKGKENGHILLIESAFGLAFTMVDNVNKHRTELNSNYTMKGASTLLLVWSGTRWVQISYSKNF
Ga0193692_106993323300020000SoilMLLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF
Ga0193738_100084473300020020SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVSTHRTELNGNITMKGPSTLLLVWSGTRWVQISYSKNF
Ga0210380_1016139723300021082Groundwater SedimentMLSIGPRKSVTVTKTNRTITVGDSSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNLPIHHTELSATRKMKGGDEMLLVWSGTRWVQVSFSKNS
Ga0193706_101128023300021339SoilMLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVKLTAGRANGHILLIESAIGLAFTMVDNVSLHKTELSGNHKMVGADTLLLVWSGSRWVQISFSKNS
Ga0193694_10000023083300021415SoilMLLSIAPRKSIQVTKPKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF
Ga0222622_1004311213300022756Groundwater SedimentMLSIGPRRSVQVTKTSPSINVGDSSYLSVRGDGNNPKVILSRGKENGHLLLIESALGLPFTMVDNVNTHRTELGASSRKMKGADELLLVWSGTRWVEISFAKNS
Ga0247745_109883913300022898SoilMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSR
Ga0247756_105177313300023078Plant LitterMFLSIAPRKSIQVTKAKPTITVGDNSYLLVRGDGNNPKVILTRGKEYGHILLIECAMGLPFTMVDNVAKHRTDLQGNINMKGPSTLLLVWSGTRWVQISYSKNF
Ga0247794_1015408213300024055SoilQKPFTMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVPKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF
Ga0207697_1009338423300025315Corn, Switchgrass And Miscanthus RhizosphereMLSIGPRKSVKVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVTTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSKNS
Ga0207645_1045708523300025907Miscanthus RhizosphereMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVSKHRTELSGNITMKGASTLLLVWSGSRWVQISHSKNF
Ga0207643_1081683713300025908Miscanthus RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLLVRGDGNNPKVILTRGKEYGHILLIECAMGLPFTMVDNVAKHRTDLQGNINMKGPSTLLLVWSG
Ga0207681_1077569813300025923Switchgrass RhizosphereMFLSIAPRKSVQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVSKHRTELSGNITMKGASKF
Ga0207712_1002879363300025961Switchgrass RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESALGLPFTMVDNVAKHRTELNGNITMKGPSTLLLVWSGLRWVQISYSKNF
Ga0207648_1177865613300026089Miscanthus RhizosphereMLSIGPRKSVKVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVTTHRTELSATRKMKGGDEMLLVWSGLRWVQV
Ga0207676_1029807713300026095Switchgrass RhizosphereMLSIGPRKSVQVTKANPTINVGDSSYLSVRGDGNNPKVILSRGKENGHLLLIESALGLPFTMVDNVSTHRSELGASSRKMKGADELLLVWSGTRWVEISFAKNS
Ga0256865_102262023300027657SoilMLSIAPRKSVVVTKNNPTMTVGSDSYLSVRGDGTNPKVILTRGRENGHLLLIECSLHFGFRMVDDIKKHRTELSKNYSMKGGDTLLLV
Ga0209682_1012078913300027716Wetland SedimentMLLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGRENGHILLIESAVGLAFTMVDNVPKHRTELSGNITMKGASTLLLVWSGSRWVQISYSKNF
Ga0209481_1000339163300027880Populus RhizosphereMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHILLIESAVGHAFTMVDNVAKHRTELSGNITMKGASTLLLVWSGLRWVQISHSKNF
Ga0209486_1002772833300027886Agricultural SoilMYLSIAPRKSIQVTKAKPTITIGDNSYLSVRGDGTNPKVILTRGKENGHILLIESALGLAFTMVDNVSKHRTELSGNITMKGPSTLLLVWSGSRWVQISYSKNF
Ga0207428_1000572163300027907Populus RhizosphereMRMLSIGPRKSVQVTKTNRTITVGDSSYLSVRGDGNNPRVILTRGKENGHLLLIESALGLPFTMVDNVPTHRTELSGTRTMKGADELLLVWSGLRWVQVSFSKNH
Ga0307500_1016459023300031198SoilMLSIGPRKSVKVTKTNRTITVGDSSYLSVSGDGTNPRVVLTRGKENGHLLLIECSLALGFTMVDNLPIHHTELSATRKMKGGDEMLLVWSGTRWVQ
Ga0310887_1069853913300031547SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESAMGLPFTMVDNVPKHRTELNGNIKMNGPSTLLLVWSGTRWVQISYSKNF
Ga0310813_1094956623300031716SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGTNPKVILTRGKENGHMLLIDSALGLAFSMVDNVPKHRTELNGNITMKGPSTLLLVWSGSRWVQISYSKNF
Ga0310900_1039044023300031908SoilMFLSIAPRKSIQVTKAKPTITVGDNSYLSVRGDGNNPKVILTRGKENGHILLIESAMCLPFTMVDNVPKHRTELNGNIKMNGPSTLLLVWSGTRWVQISYSKNF
Ga0310901_1041742523300031940SoilMRMLSIGPRKSVQVTKTNRTITVGDSSYLSVRGDGNNPRVILTRGKENGHLLLIESALGLPFTMVDNVPTHRTELSGTRTMKGADELLLVWSGLRWVQ
Ga0310906_1047209523300032013SoilMFLSIAPRKSIQVTKAKPTITVGENSYLSVRGDGNNPKVILTRGKENGHILLIECAMGLPFTMVDNVAKHRTDLQGNITMKGPSTLLLVWSG
Ga0310906_1048124523300032013SoilMLSIGPRKSVKVTKTNRTITVGDNSYLSVSGDGTNPRVILTRGKENGHLLLIECSLALGFTMVDNVTTHRTELSATRKMKGGDEMLLVWSGLRWVQVSFSK
Ga0364945_0174382_2_2893300034115SedimentMLSIGPRKSVQVTKTNRTITVGDNSYLSVRGDGTNPRVILTRGRENGHLLLIESALGLPFTMVDNVPVHRTELSATRTMKGADELLLVWSGLRWVQ
Ga0364931_0090789_204_5153300034176SedimentMLSIGPRKSVKVTKTNRTITVGDSSYLSVSGDGTNPRVVLTRGKENGHLLLIECSLALGFTMVDNLPIHRTELSATRKMKGGDEMLLVWSGTRWVQVSFSKNS


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.