Scaffold Ga0193694_1000001

Overview

Basic Information

• Taxon OID: 3300021415
• Scaffold ID: Ga0193694_1000001
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1862607
• Total Scaffold Genes: 1727
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 241 (13.95%)
• Novel Protein Genes: 25
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (8.00%)
• Associated Families: 25

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9137
  • Long. (^o): -106.8949
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006472	Metagenome / Metatranscriptome	372	Y
F006921	Metagenome / Metatranscriptome	362	Y
F008652	Metagenome / Metatranscriptome	330	Y
F010546	Metagenome / Metatranscriptome	302	Y
F012355	Metagenome	281	Y
F012727	Metagenome / Metatranscriptome	278	Y
F012883	Metagenome	276	Y
F013192	Metagenome / Metatranscriptome	273	Y
F014562	Metagenome / Metatranscriptome	262	Y
F015447	Metagenome	254	Y
F016688	Metagenome	245	Y
F019045	Metagenome / Metatranscriptome	232	Y
F024495	Metagenome / Metatranscriptome	205	N
F027225	Metagenome	195	Y
F028627	Metagenome	191	Y
F031542	Metagenome / Metatranscriptome	182	Y
F036292	Metagenome	170	N
F039185	Metagenome / Metatranscriptome	164	Y
F043109	Metagenome	157	N
F043458	Metagenome / Metatranscriptome	156	Y
F053373	Metagenome	141	Y
F062855	Metagenome	130	Y
F072394	Metagenome / Metatranscriptome	121	Y
F089463	Metagenome	109	Y
F093453	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193694_10000011022	F043109	N/A	MAELPEKKIFRTEVKLQTLMPDLLLILFAIAFPITSFIIDINHHRADWFARSGAVSAIIGIVLASRSIKKHNQKFFSNIELNDLGKEMLHTSIPQLKIDKWTLVLSIIGTLIWAYGDKVIELFLE
Ga0193694_10000011029	F013192	N/A	VLFDRFTEQTRQFIKVLLRGERYPGEYKNCKDTLESIQKQLLWEEKRSDDNISVSAPQKLSININRG
Ga0193694_10000011032	F014562	N/A	MKTIFLKLIPISIFSIIICSSCNKEKDVLNRNTALLIEKSWKFKIYGLDENNNGVIEEAENNMLDCETDDVYTFYANGGGAFRGGINSCSMGETPVINFNWRFENNCTELAIFAAPEKINQLDENILEVYYMDVNSQGLPVKYIRRFIH
Ga0193694_10000011046	F006921	N/A	MKKNIFCFSFLLTSVLIISNTQAQSLKNLEDNNGFKKYKLGSKFVLGLGVKNKDAEGADKIVIDYAKESIGDIPVKTIELYYLKDTLAKIIVQVPPEYYEKLINACKSSFGQPTKDFSYDEKVKLDSTAPINYYKDNYIWKATRMRMEYFYLYPKVSTGGYGTRTLNLTYILNDYGQRLQRIQRGINSAKNF
Ga0193694_10000011179	F006472	N/A	MKIAQHFRAFLERHNYLHLPQIGKFEVVGENPAAGENGHSKWINFSADQNQTTDSELVAFISKKMKVESNLTASDLSCFISSIKEMLILGFEVEIPGIGYLHFESGNILRFSGKNIYKKTIQKGWKRIPASMSTFWL
Ga0193694_10000011222	F012355	N/A	MKKLFLILAYIFIPKIFFAQTKDLPDCKTIKKEIAEVHNSFDNIVEKFRSKEDKVSLVKTYFSDFSICGEKGKIKDYGRNIEFIFYFTDAYYNGSRLEFRNFYKKVFKKIKDEFAATHVYKISKEQSAKSSYFYEKGKEMTSSKRNIKLLLSYKDPVDKTTAYSVSLIFDYYPKR
Ga0193694_10000011236	F010546	N/A	MDPIQINFKHNGVTYKDCYFTKITRNDGAPSFWHLYDGENCYLGRLRFTDQWTFDPNKKSTAIDQLAEYFGDFVEKANRSKAKAA
Ga0193694_10000011256	F027225	N/A	LKRIILILLYGICFFFVFISCKKTEEKKELWAPIIDFFSPDSTHYPGNKKFPFPDSLRFVSLESFFSNQDKKPILTDSTIIFFDNYRVNGQKFCCKKDTLEFFIDSIKGKKYMFVIGEYISALQSNNNTDTNLRIRKTPDSISLWGIQLNVAYPISKFKGEYEKLGAKFVEIDPRNDEISRQKWNENDSILVETIQFNNSTDKIITAVQKEVTENEMNSIIEQLKNKFPTIRYEEAIQRDIDGKPFKVIRMSFQGISVSFKQNEENEYSFMITDYYETLKLILNNAGVGYIFTDEVKIY
Ga0193694_10000011588	F019045	N/A	LKFDVSFFRRMKKKENLWELLQRLDEEAGQFNFHLHEANRYFDSTALVTKKILEKHEKRLHKLIVKVQKSLRSFQGQQIKKPKKDV
Ga0193694_10000011627	F031542	N/A	MRVLEEKEIKQLNSARRNAELLVVEPPRSLFKIVVNNYRQQEKSLEKQKDQIGETMMNDQQSLPPQPAGYIKFPEYDWF
Ga0193694_10000011707	F012727	N/A	MRRILKSIIIRKIYIQKQKQAHDFCGFVFMFLTPPTLEELNQSDLPDLMDMLSNQSIEYSRIIKLEGVTSKSNAIKELILNIQTAIESKKVSEKSKIIG
Ga0193694_100000123	F072394	N/A	MKAEINDQMSTKFKILLVASIGILAAVIALGEMGII
Ga0193694_1000001387	F053373	N/A	MKKQFLFWLILPLMAFTSFEWVTVSIDERVSVDFPVKPQQSESSGNPMWMADANRDSRCMAMIIDFKNLGMDSAQVAAEMGKPEFYDDFKNGVLGQIKGASLMSEKVTITLGYKTFEYLINMGKKDTSSLNIMHNKNIFVGAKLYTMNFFEKNGKPQDQVRDQFFRSIKIK
Ga0193694_1000001396	F016688	GGA	MKKLQLVELGIIATALIMGYKMITSLLTLMTSLLFGFGTGIGGNLMMAILPTVLFFAFYTITFFLLARNIKPLAKFICRENEELLEFKLNKVAVLHVIIIAICLSSLLQTIPEIIQYIAGKFINITQYGEDFEPAELRTSKIRFWNSLIGFIISILLLITSKSISSFFGKDEPSYEIGGEKIESNL
Ga0193694_1000001456	F024495	GGA	MKKKILLLTGLIFIIGSVFGQKSKGELKFDKKLLCPFENGMGREPKEAFTWDPPDKKVIMISKTDTAIRSCIDAKVLSINPTEDGRFEIVIYYKEWYFWYYGISKALVNVNQQIKAGQVLGLYTIGKEMEFRMFKDEEPMDSREFLECKPAEEKKE
Ga0193694_100000146	F036292	N/A	LDHPLPKMTKELVYILGKFPDHSEKIIDLYNKDEDFRILCEDYITSIQAAEERRLNAIKDRKIEREFLHVNIELEKEIIHLLETYQQKDLT
Ga0193694_1000001553	F089463	N/A	MILFIVHRFKKRKTFKTLFSEAVSEGIRDTMLEMGYHFEDKKKDTDKVSINFP
Ga0193694_1000001579	F008652	N/A	MKSAGAIQVVIILLLVASAASCEVAKEYSTRVFKPTTPQKNSDSTATALRFMQFDSENASDSIDLKDLASKEIKETEKTELSKDTTIKTEATVIENKEVVKSQPIDATKRGQTRTKKVRQ
Ga0193694_1000001616	F039185	N/A	MDKEIIVQFVFFETMGDNNEFISQWDQYSKEMKNIQKIKLQQEVGNKKKAKYLSQHSCYKDEFKFVFKKERRSAHFPEVEMRIRQLGGYTPLQVQSNRNSKPNESKVFVFMNGYETDMNSCSKLSHYRFLNIYKAYFESSNYDYILEFLVDNDQSTEFMDQLKTQTGHFESGIYKECVLEAV
Ga0193694_1000001675	F043458	N/A	MKELQDFQPTQLVNLLAKETISYYKLIGDAASVEECTQCNDRIRQIELELGSRRDPQERNILNRQYKTPSPSPEYSY
Ga0193694_1000001791	F093453	N/A	LYAASLSYPIIPSEIPDLFNIPVKFTFYFDQPNTKTVIALAVFIQLQEAMEAKVVYLYPDVKTK
Ga0193694_1000001842	F015447	N/A	MNKTPDSLDHVQFDPKYNLQMMFELLVEIIALQQATNKVLTERLYGEEAILVEDEIIKACADLKPRIMESLYAQFGKIPSLKPKSKPRPKPKP
Ga0193694_1000001865	F062855	N/A	MIRTICTIFFLLIFYTCFSQFEKNNFYSGKAITLRTNPFSFLQSDAGIMIGVNYRWRQRWSATLDPKFIFYAVEPPENSMIPRKPLGVRVKTDIRYHIRNVFIAPELVFGYTRTKITAEFGVNCVGGNCAYYTLQEYTEIKKEAGGAIKIGMTGPIRKNNENWKLELYTGIGVSFFDFQEKGIPPGGSFMRPQTHENGLGTMDEDEPNIMIPFGLIITYRIK
Ga0193694_100000191	F028627	N/A	MNLDVIAQLKEVIALLNKIERTYASERSKTIGQLQNKIWDEPELQNEELYFLQDLAGDLNFYEPIERDRDTALGYYDDDRLLELKSAALKNIDTFLAAR
Ga0193694_1000001965	F012883	N/A	MNSRAIINKTLILSVFVIAGYLLARSFYYGSFIGIVLALLAIAAWSMFLYKLNKMQSENDSEEMSETY