Scaffold Ga0210383_10000024

Overview

Basic Information

• Taxon OID: 3300021407
• Scaffold ID: Ga0210383_10000024
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 190173
• Total Scaffold Genes: 220
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 170 (77.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000313	Metagenome / Metatranscriptome	1323	Y
F031846	Metagenome / Metatranscriptome	181	Y
F032359	Metagenome / Metatranscriptome	180	Y
F043003	Metagenome / Metatranscriptome	157	Y
F057536	Metagenome / Metatranscriptome	136	Y
F060180	Metagenome / Metatranscriptome	133	Y
F063959	Metagenome / Metatranscriptome	129	Y
F104827	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210383_10000024101	F104827	N/A	MGRRIDHTGDDMTAIASAFTSEGFVIGADGRQLGKDRKIISEFSQKIFNFTYRHIDVVYAWCGETGVVNESNEVIYDLYAITRVALRSAVQLAARQFPSSIQQSCTGIYEGIIKSPVVRQITNSDSLPDSKARMLLNGYFEGQPFMTEFHVRETDRIRVEAERVLMPIPAPTRNLFNGCTRENKKYESVLPTTNLEALKLVSDYIQECIDNSDADCSGIGGHRHIAHLTPDGFYWVDAPEKST
Ga0210383_10000024108	F043003	GGA	MLRANSVEKRRQVAGICIVLGLVIEALCLIWSTPIAFVIFVAIGGLLMFVGIVLYLYSLVVHLEAPE
Ga0210383_10000024118	F063959	AGGAGG	MERFLICNNPKCHFVLDRRINGRSLDGAQLILKKCPSCGGDWSSTCPSCAQALVVKLVAGLPESVCCDRKLAASARAA
Ga0210383_10000024152	F057536	AGCAG	VVSTEFLDRLASQLKVGKDPASRRAIERILEIIKKSYEEGKYQSPVEAERDFRQLVGLDE
Ga0210383_10000024153	F060180	AGGAG	MANHAVWNPPTELRDQSESLQGAESALDNNLENRINNLDKLVDSINSALGQETFSGKPDALDLVNDLHLKIRATHNMLRVAKLLREPARESMLSKVRDSLNDFEHIVASRFGVEMT
Ga0210383_10000024193	F032359	AGGAG	MAWLIRKLRIPASESSMGIVLTLCIVTMGLMSVALLWQAQIIANQREAIRWLETLKFGG
Ga0210383_1000002461	F031846	AGGA	VFGIDLAVSIMDGPELSEKRRKELALALLMAETIGVILYTGESDSDIRIEAAKDMACEFRHVYPEIAET
Ga0210383_1000002498	F000313	N/A	MPKIVERWLLFKYVGREFTPLSKPFTTKEKAEKARLKFPERERKAIGIGVIRTNS