Scaffold Ga0194047_10000162

Overview

Basic Information

• Taxon OID: 3300021354
• Scaffold ID: Ga0194047_10000162
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46996
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (11.63%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.701
  • Long. (^o): -93.727

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026551	Metagenome / Metatranscriptome	197	Y
F028487	Metagenome	191	Y
F029671	Metagenome / Metatranscriptome	187	Y
F034547	Metagenome / Metatranscriptome	174	Y
F039634	Metagenome / Metatranscriptome	163	Y
F053807	Metagenome / Metatranscriptome	140	Y
F070891	Metagenome / Metatranscriptome	122	N
F091365	Metagenome / Metatranscriptome	107	N
F092025	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194047_1000016216	F026551	N/A	MAKATSSVKKISFGKRKGGKASKTKGPNDKAVSKYRGQGK
Ga0194047_1000016224	F092025	N/A	MSEIFNLNDYAKQSPKFDPSKKYTWSQDAKFTIDGNDFGMLLNTLRAITGTKEAQTILLAHDAGDVLEKTLADAVEAGIVVEVSENK
Ga0194047_1000016232	F034547	N/A	MKSAKITNKQAKSVKPMTAGKAKGSGTPRPAPKVAPPNPINGNYMKEADTPARLKSKMWPLKQKRLSK
Ga0194047_100001624	F029671	N/A	MKSIELKVAKENIGGRETFLTTYDLLKSAINNPSKEGFSVDEMIKRLRLLNEVDKHKATFEIEEGKFDDSMLDKKATLELEDADFTKLKELFKEMKWGVVSTTIVDLHNEFEK
Ga0194047_1000016244	F028487	N/A	MYNSDILNHLISKYGIDDVIKFCDMESEKNALLAQSVEEDKQHYPEPNEWKFERDWWAESGKQLKSRI
Ga0194047_1000016261	F039634	N/A	MRLDIKTYNTLPTTKSHWWQMVVLPTLSVMNNIQKRDPYVAFNFEWLFWSFTTILSYGKKGTFFTR
Ga0194047_1000016278	F053807	N/A	MSYSLVFSAKPHCTRTITVYEPTQEFSPYMRSIRACSKLIDAIFAIKANYKPSKRLHIKGRRYMYISSDEYKLIRVKDFSK
Ga0194047_1000016279	F091365	N/A	MKKNMKKYSQTELTTMTEMAKKPISTSKLARRLAKEFNRTYVGVYARLLTIRKNVIVEPKTVTGTVTKTPVQAKSHTISSRPTKIEISDAGMTFYF
Ga0194047_1000016282	F070891	N/A	MMNGQLMTLNQMMETMKQNNNSFKTKEMKKIFDILFKDKEPEEQPLKLEIKLKSTATPDEKLDQNEWFRHIHDSLKKSR