Scaffold Ga0210408_10000004

Overview

Basic Information

• Taxon OID: 3300021178
• Scaffold ID: Ga0210408_10000004
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 411559
• Total Scaffold Genes: 393
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 310 (78.88%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001574	Metagenome / Metatranscriptome	669	Y
F015364	Metagenome / Metatranscriptome	255	Y
F018971	Metagenome / Metatranscriptome	232	Y
F020232	Metagenome / Metatranscriptome	225	Y
F022039	Metagenome / Metatranscriptome	216	Y
F027575	Metagenome / Metatranscriptome	194	Y
F045388	Metagenome / Metatranscriptome	153	N
F077529	Metagenome / Metatranscriptome	117	Y
F077545	Metagenome / Metatranscriptome	117	Y
F105573	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210408_10000004124	F077545	GAGG	MTSLHTKLVLSALGIALLSGPAVARQLPDQSNVVVNGQIVGADPDAQIRTQLLREWDFRYGE
Ga0210408_10000004129	F015364	AGGAG	MPSRKKLPDQPPYLKRRTFEQGRAEVDAAHVATCRLYCDALDLWRRCAEPLCRRHRHCLGEPTGCFVRGLHRVSARRRLEAQKVVIAGGPRRIAPATHIEWTVRRSALKQIVSWGLG
Ga0210408_10000004131	F001574	GAGG	MATLKLGTLAFADWRAGGLFRPAAEKFAGAWLACLLVMARGNVFAAFSPEHLYLATVCGTVGAIVTVALLLQMDRTTNSVGRQATISAVVTLIGDVFAHPSHFPPQWAEPLVTAAVSAGIAVALWYGKRWAGFAY
Ga0210408_10000004138	F027575	N/A	MTVGRPAKPDRLAALIAWMLVVRVDNLVKDGAKRRRLRRSTILDKIINANRVLSKRSRPLSPPSDIFLIPHKIA
Ga0210408_10000004216	F018971	AGGA	MSDSGRKFAGAEHVAPPLAPIGINDILRDADVLLALMGQEPLGVVAELANTLTVSAHEAGARDIEEAASNVRRLASGRGPVALTGAMRALTDAIARTERAFAA
Ga0210408_10000004265	F077529	GGAGG	MRNRWRAGCLAAGMVAVGVAPTVAQAPVQAPRTYECTANAHCSVSCQVDGEKQMQTGAPKTITVTPIAPNNYVVELVEQNGHVQTLYLAGTKVACNLDGLTRKAE
Ga0210408_1000000446	F045388	GAGG	VRSSRLTDDDLWRVIADNTDAMSVLIEKQFELDADAGTPDPDTRQKQMLFNVQAIDNYNRQYRDCIAEIRRRHPSI
Ga0210408_1000000447	F020232	GGAGG	MAEPAAEPIPPDFAEAFAYAVLVYEIWTPEEPGRLIQIGSRSYSIIEVCRFVDQFADRLPERVYLKLRSYLRDDPDGKLKADLAADPSYATAVRCLRGMMQRRTEVHKQRGGTEG
Ga0210408_1000000448	F022039	GGAGG	MKNDPADFDKIDAALMSYELSDEALEAAARVDRGTAITVGYCATASNAWYCMPL
Ga0210408_1000000450	F105573	GGAG	MKTRHDQQKPAQGRELLESIGREIRTNIDLAEPIPDRLNELIEQLVLRIDEREKEREEV