Metagenome / Metatranscriptome Family F077545

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077545
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	68 residues
Representative Sequence	MKSLSTKLVLSALGFALLSGPALAQKPADQYPVDQYKVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Number of Associated Samples	79
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.93 %
% of genes near scaffold ends (potentially truncated)	15.38 %
% of genes from short scaffolds (< 2000 bps)	76.92 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.684 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.915 % of family members)
Environment Ontology (ENVO)	Unclassified (31.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (78.632 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 31.58% β-sheet: 9.47% Coil/Unstructured: 58.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00732	GMC_oxred_N	26.50
PF13458	Peripla_BP_6	23.08
PF05199	GMC_oxred_C	3.42
PF03279	Lip_A_acyltrans	2.56
PF03928	HbpS-like	1.71
PF00483	NTP_transferase	0.85
PF08240	ADH_N	0.85
PF13505	OMP_b-brl	0.85
PF13450	NAD_binding_8	0.85
PF05987	DUF898	0.85
PF13416	SBP_bac_8	0.85
PF01850	PIN	0.85
PF00890	FAD_binding_2	0.85
PF01494	FAD_binding_3	0.85
PF00596	Aldolase_II	0.85
PF02801	Ketoacyl-synt_C	0.85
PF02705	K_trans	0.85
PF01243	Putative_PNPOx	0.85
PF00107	ADH_zinc_N	0.85
PF07542	ATP12	0.85
PF01946	Thi4	0.85
PF00106	adh_short	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	29.91
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	2.56
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	2.56
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.71
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.85
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.85
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.85
COG1635	Thiazole synthase/Archaeal ribulose 1,5-bisphosphate synthetase	Carbohydrate transport and metabolism [G]	0.85
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.85
COG4269	Uncharacterized membrane protein YjgN, DUF898 family	Function unknown [S]	0.85
COG5387	Mitochondrial FoF1-type ATP synthase assembly chaperone ATP12	Posttranslational modification, protein turnover, chaperones [O]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.68 %
Unclassified	root	N/A	39.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.68 %
Unclassified	root	N/A	39.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.68 %
Unclassified	root	N/A	39.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	38.46 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.32 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.32 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.08 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.32 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.13 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.85 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.85 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.32 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.56 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.85 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.85 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.32 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.56 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.85 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.85 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.32 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.56 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.85 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.85 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10019696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4203	Open in IMG/M
3300000567\|JGI12270J11330_10112985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1135	Open in IMG/M
3300001619\|JGI20250J16331_102934	Not Available	684	Open in IMG/M
3300003505\|JGIcombinedJ51221_10122165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1045	Open in IMG/M
3300004092\|Ga0062389_103709428	Not Available	573	Open in IMG/M
3300005439\|Ga0070711_101958506	Not Available	515	Open in IMG/M
3300005538\|Ga0070731_10125299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1702	Open in IMG/M
3300005538\|Ga0070731_10240406	All Organisms → cellular organisms → Bacteria → Proteobacteria	1202	Open in IMG/M
3300005538\|Ga0070731_11204295	Not Available	500	Open in IMG/M
3300005542\|Ga0070732_10000157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	56492	Open in IMG/M
3300005602\|Ga0070762_10351684	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300005602\|Ga0070762_10564081	Not Available	752	Open in IMG/M
3300005610\|Ga0070763_10533145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	675	Open in IMG/M
3300005921\|Ga0070766_10292775	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300006050\|Ga0075028_100843558	Not Available	561	Open in IMG/M
3300006102\|Ga0075015_100809594	Not Available	563	Open in IMG/M
3300006176\|Ga0070765_100264063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1582	Open in IMG/M
3300006176\|Ga0070765_100718622	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300006176\|Ga0070765_100997814	Not Available	791	Open in IMG/M
3300006893\|Ga0073928_10249661	All Organisms → cellular organisms → Bacteria → Proteobacteria	1357	Open in IMG/M
3300006893\|Ga0073928_10322646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1152	Open in IMG/M
3300006893\|Ga0073928_10499201	Not Available	873	Open in IMG/M
3300009521\|Ga0116222_1082931	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300009522\|Ga0116218_1167746	Not Available	995	Open in IMG/M
3300009523\|Ga0116221_1326697	Not Available	665	Open in IMG/M
3300009524\|Ga0116225_1054060	All Organisms → cellular organisms → Bacteria	1926	Open in IMG/M
3300009524\|Ga0116225_1397250	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300009698\|Ga0116216_10352670	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300009700\|Ga0116217_10420822	Not Available	846	Open in IMG/M
3300009839\|Ga0116223_10425822	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300010379\|Ga0136449_101100607	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300010379\|Ga0136449_102058096	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300014164\|Ga0181532_10087642	All Organisms → cellular organisms → Bacteria	1963	Open in IMG/M
3300014489\|Ga0182018_10034865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3169	Open in IMG/M
3300014501\|Ga0182024_10106157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4070	Open in IMG/M
3300014501\|Ga0182024_10182010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2901	Open in IMG/M
3300014501\|Ga0182024_11694936	Not Available	712	Open in IMG/M
3300017946\|Ga0187879_10020731	All Organisms → cellular organisms → Bacteria	4060	Open in IMG/M
3300018038\|Ga0187855_10637591	Not Available	621	Open in IMG/M
3300018047\|Ga0187859_10298408	Not Available	872	Open in IMG/M
3300019888\|Ga0193751_1002512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11084	Open in IMG/M
3300020021\|Ga0193726_1000103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	139271	Open in IMG/M
3300020579\|Ga0210407_10162418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1726	Open in IMG/M
3300020579\|Ga0210407_10725066	Not Available	770	Open in IMG/M
3300020580\|Ga0210403_10475387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1017	Open in IMG/M
3300020580\|Ga0210403_10917091	Not Available	690	Open in IMG/M
3300020581\|Ga0210399_10827458	Not Available	755	Open in IMG/M
3300020581\|Ga0210399_10923207	Not Available	707	Open in IMG/M
3300020582\|Ga0210395_10003689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11737	Open in IMG/M
3300020583\|Ga0210401_10476089	Not Available	1111	Open in IMG/M
3300020583\|Ga0210401_10660047	All Organisms → cellular organisms → Bacteria → Terrabacteria group	907	Open in IMG/M
3300020583\|Ga0210401_10713887	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300021088\|Ga0210404_10444330	Not Available	729	Open in IMG/M
3300021170\|Ga0210400_10359817	Not Available	1199	Open in IMG/M
3300021171\|Ga0210405_10003285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15978	Open in IMG/M
3300021171\|Ga0210405_10044143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3537	Open in IMG/M
3300021171\|Ga0210405_10275190	Not Available	1331	Open in IMG/M
3300021171\|Ga0210405_10594738	Not Available	862	Open in IMG/M
3300021178\|Ga0210408_10000004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	411559	Open in IMG/M
3300021178\|Ga0210408_10017758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5723	Open in IMG/M
3300021180\|Ga0210396_10000055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	227140	Open in IMG/M
3300021180\|Ga0210396_10091970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2748	Open in IMG/M
3300021401\|Ga0210393_11480066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300021402\|Ga0210385_11246653	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300021406\|Ga0210386_10378263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1219	Open in IMG/M
3300021407\|Ga0210383_11371391	Not Available	589	Open in IMG/M
3300021420\|Ga0210394_10207938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1707	Open in IMG/M
3300021420\|Ga0210394_10733611	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300021420\|Ga0210394_11766552	Not Available	516	Open in IMG/M
3300021475\|Ga0210392_10481295	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300021477\|Ga0210398_10139584	All Organisms → cellular organisms → Bacteria	1970	Open in IMG/M
3300021478\|Ga0210402_10295126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1500	Open in IMG/M
3300021478\|Ga0210402_11165931	Not Available	698	Open in IMG/M
3300021479\|Ga0210410_10057281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3400	Open in IMG/M
3300021479\|Ga0210410_11656592	Not Available	533	Open in IMG/M
3300022557\|Ga0212123_10107052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2264	Open in IMG/M
3300022557\|Ga0212123_10270699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1206	Open in IMG/M
3300022557\|Ga0212123_10379561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	955	Open in IMG/M
3300024225\|Ga0224572_1035240	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300024225\|Ga0224572_1037962	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300024225\|Ga0224572_1076343	Not Available	618	Open in IMG/M
3300024271\|Ga0224564_1000366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6309	Open in IMG/M
3300025464\|Ga0208076_1036609	Not Available	858	Open in IMG/M
3300025898\|Ga0207692_10263627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1037	Open in IMG/M
3300027069\|Ga0208859_1004780	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300027497\|Ga0208199_1040082	Not Available	1011	Open in IMG/M
3300027604\|Ga0208324_1064029	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300027605\|Ga0209329_1023418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1256	Open in IMG/M
3300027635\|Ga0209625_1002041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4580	Open in IMG/M
3300027684\|Ga0209626_1002213	All Organisms → cellular organisms → Bacteria	4260	Open in IMG/M
3300027842\|Ga0209580_10000009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	526598	Open in IMG/M
3300027854\|Ga0209517_10317243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	904	Open in IMG/M
3300027854\|Ga0209517_10373959	Not Available	809	Open in IMG/M
3300027869\|Ga0209579_10006137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8024	Open in IMG/M
3300027869\|Ga0209579_10423687	Not Available	722	Open in IMG/M
3300027884\|Ga0209275_10425023	Not Available	752	Open in IMG/M
3300027884\|Ga0209275_10872362	Not Available	519	Open in IMG/M
3300027889\|Ga0209380_10010379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5412	Open in IMG/M
3300028906\|Ga0308309_11458440	Not Available	585	Open in IMG/M
3300029636\|Ga0222749_10147710	Not Available	1143	Open in IMG/M
3300030707\|Ga0310038_10194973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	971	Open in IMG/M
3300030940\|Ga0265740_1008112	Not Available	910	Open in IMG/M
3300030945\|Ga0075373_10004518	Not Available	552	Open in IMG/M
3300031057\|Ga0170834_113567179	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300031090\|Ga0265760_10018628	All Organisms → cellular organisms → Bacteria	2000	Open in IMG/M
3300031090\|Ga0265760_10141410	Not Available	784	Open in IMG/M
3300031128\|Ga0170823_17076946	Not Available	693	Open in IMG/M
3300031474\|Ga0170818_100456731	Not Available	696	Open in IMG/M
3300031595\|Ga0265313_10255792	Not Available	713	Open in IMG/M
3300031708\|Ga0310686_118458332	Not Available	657	Open in IMG/M
3300031708\|Ga0310686_119598543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1980	Open in IMG/M
3300031718\|Ga0307474_10299010	Not Available	1240	Open in IMG/M
3300032160\|Ga0311301_10092492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6023	Open in IMG/M
3300032160\|Ga0311301_10128536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4724	Open in IMG/M
3300032160\|Ga0311301_10681818	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300032160\|Ga0311301_10781353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1317	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.58%
Host-Associated	Host-Associated	3.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.47%
Aquatic	Environmental → Aquatic	11.11%
Plants	Host-Associated → Plants	3.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.47%
Thermal Springs	Environmental → Aquatic → Thermal Springs	5.13%
Freshwater	Environmental → Aquatic → Freshwater	4.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.42%
Sediment	Environmental → Aquatic → Sediment	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.96%
Loam	Environmental → Terrestrial → Soil → Loam	17.09%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	5.13%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.38%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	5.13%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.27%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	17.95%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.84%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.98%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	5.13%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.56%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.56%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001619	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027069	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100196962	3300000567	Peatlands Soil	MKSLSTKLVLSALGFALLAGPAVAQQPADQYPADQYKVVIRGQIVGADPDAQIRTQLTREWDSRYGE*
JGI12270J11330_101129852	3300000567	Peatlands Soil	MKSLSTKLVLSALGLALLAGPAVAQRPNPYLADQYLPDQYLADQYKVIVRGHIVGADPDAQIRSQLSREWDSRYGE*
JGI20250J16331_1029341	3300001619	Forest Soil	MKSLNTKLFLSALGFALLSGPALAQKPADQYPVDQSKVVVRGQIVGADPDAQIRTQLSRQWDFRYGE*
JGIcombinedJ51221_101221652	3300003505	Forest Soil	MKSLSTKLVLSALGFALLAGPAVAQQPADQYSADQYKVVIRGHIVGADPDAQIRTQLSREWDFRYGE*
Ga0062389_1037094281	3300004092	Bog Forest Soil	MKSLSTKLVLSALGFALLSGPALAQKPADQYPADQYKVVVRGQIVGADPDAQIRSQLSREWDFRYGE*
Ga0070711_1019585062	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTSLHAKLVLSALAIALLSGPAVARQLPDPSSVVVNGQIVGADPDAQIRTQLLREWDFRYGE*
Ga0070731_101252992	3300005538	Surface Soil	MKSLHTKLILSALGFALLAGPAAAQQPADQYPVDQYKVIVRGQIVGADPDAQIRTQLSREWDFRYGE*
Ga0070731_102404062	3300005538	Surface Soil	MKSLNTKLVLSALGIALLSGPAVAQHMPDQSKVIVNGQIVGADPDAQIRTQLLREWDSRYGE*
Ga0070731_112042951	3300005538	Surface Soil	MKSLSTKLVLSALGLALLAGPALAQRPNPYLADQYLPDQYLADQYKVVVRGHIVGADPDAQIRSQLSREWDFRYGE*
Ga0070732_100001579	3300005542	Surface Soil	MKSLHTKLVLSALGVALLSGPAVARQLPDQSKVIVNGQTVGADPDPQIRTQLLREWDSRYGE*
Ga0070762_103516842	3300005602	Soil	MKSLSTKLFLSALGFALLAGPALAQKPADQYPVDQWNVVVRGQIVGADPDAQIRTQLSREWDFRYGE*
Ga0070762_105640812	3300005602	Soil	MKSLSTKLNLSALGLALLAGPALAQKPADQYPVDQYRVIVRGQIVGADPDAQIRTQLSREWDFRYGE*
Ga0070763_105331452	3300005610	Soil	MKSLSTKLVLSALGLALLAGPAVAQQPADQYPVDQYKVVVRGHIVGADPDAQIRSQLTREWDFRYGE*
Ga0070766_102927753	3300005921	Soil	MKSLYTKLVLSALGIALLSGPALAQKPTDQSKVVVRGQIVGADPDAQIRSQLSREWDFRYGE*
Ga0075028_1008435582	3300006050	Watersheds	MKSLNTKLVLSALGIALLAGPAVAQRLPDPSQVMVHGQLAGSDPDSKIRTQLVREWDFRYGE*
Ga0075015_1008095941	3300006102	Watersheds	MKSPGMKLFLSALGFALLSGPALAQYRADQYAADQYLPDQWTVVVRGQIVGADPDAQIRNQLSREWDSRYGE*
Ga0070765_1002640632	3300006176	Soil	MKSLSTKLVMSALGFALLSGPALAQKPADQYPVDQTKVVVRGQIVGADPDAQIRTQLSREWDFRYGE*
Ga0070765_1007186222	3300006176	Soil	MKSLRTKLVLSALGVALLSGPALAQYAANPYAADQYPADQWTVVVRGQIVGADPDPQIRTQLSREWDFRYGE*
Ga0070765_1009978141	3300006176	Soil	MKSLSTKLVLSALGFALLSGPALAQKPADQYPVDQYKVVVRGQIVGADPDAQIRTQLSREWDFRYGE*
Ga0073928_102496612	3300006893	Iron-Sulfur Acid Spring	MKSLSTKLFLSALGFTLLAGPALAQKPADQYPVDQYRVVVRGQIVGADPDAQIRTQLSREWDFRYGE*
Ga0073928_103226462	3300006893	Iron-Sulfur Acid Spring	MKSPYTKLVLSAFGFALLAGPAVAQKPTGQSNVVVRGQIVGADPDAQIRTQLNREWDFRYGE*
Ga0073928_104992011	3300006893	Iron-Sulfur Acid Spring	MKSLSTKLVLSALGFALLSGSALAQKPADQYPVDQTKVVVRGQVVGADPDAQIRSQLSREWDFRYGE*
Ga0116222_10829312	3300009521	Peatlands Soil	TKLVLSALGFALLAGPAVAQQPADQYPADQYKVVVRGQIVGADPDAQIRTQLTREWDSRYGE*
Ga0116218_11677461	3300009522	Peatlands Soil	MKSLSTKLVLSALGLALLAGPAVAQRPNPYLADQYLPDQYLADQYKVIVRGHIVGADPDAQIRSQLTREWDFRYGE*
Ga0116221_13266971	3300009523	Peatlands Soil	TMKSLSTKLVLSALGFALLAGPALAQQPADQYPADQYNVIVRGQIVGADPDAQIRSQLSREWDFRYGE*
Ga0116225_10540601	3300009524	Peatlands Soil	VHCRSIEKFPSEARCRSTEDATMKSLSTKLVLSALGFALLAGPAVAQQPADQYPADQYKVVIRGQIVGADPDAQIRTQLTREWDSRYGE*
Ga0116225_13972502	3300009524	Peatlands Soil	VHCRSIEKFPSEARCRSTEDATMKSLSTKLVLSALGFALLAGPALAQQPADQYPADQYNVIVRGQIVGADPDAQIRSQLSREWDFRYGE*
Ga0116216_103526701	3300009698	Peatlands Soil	FPYLAHRRSNEKFRSEARCRTTEDATMKSFSTKLVLSALGFALLAGPAVAQQPADQYPADQYKVVVRGQIVGADPDAQIRTQLTREWDSRYGE*
Ga0116217_104208221	3300009700	Peatlands Soil	MKSLSTKLVLSALGFALLAAPAVAQQPADQYPVDQYQVIVRGHIVGADPDAQIRSQLTREWDFRYGE*
Ga0116223_104258221	3300009839	Peatlands Soil	HCRSIEKFPSEARCRSTEDATMKSLSTKLVLSALGFALLAGPALAQQPADQYPADQYNVIVRGQIVGADPDAQIRSQLSREWDFRYGE*
Ga0136449_1011006072	3300010379	Peatlands Soil	MKSLSTKLVLSALGFALLAGPAVAQQPDQYIADQYLADQYKVVVRGHIVGADPDAQIRSQLSREWDSRYGE*
Ga0136449_1020580961	3300010379	Peatlands Soil	TTEDATMKSLSTKLVLSALGFALLAAPAVAQQPADQYPVDQYQVIVRGHIVGADPDAQIRSQLTREWDFRYGE*
Ga0181532_100876421	3300014164	Bog	MKSLSTKLVLSALGLALLAGPAVAQRPNPYLADQYLPDQYLADQYKVIVRGHIVGADPDAQIR
Ga0182018_100348652	3300014489	Palsa	MTSLHTKLVLSALSVALLSSPAVARAADQTNVVVNGHIVGADPDAQIRSQLAREWDSRYGE*
Ga0182024_101061571	3300014501	Permafrost	MTSLHMKLVLSALSVALLSSPAVARAADQTNVVVNGHIVGADPDAQIRSQLAREWDSRYGE*
Ga0182024_101820101	3300014501	Permafrost	MKLVLSALGFALLAGPAVAQQPADQYPADQYKVIVRGQIVGADPDAQIRTQLSREWDFRYGE*
Ga0182024_116949362	3300014501	Permafrost	MKSLSTKLLLSALGFALLAGPALAQRPADQYPAYQYKVVVRGQIVGADPDAQIRTQLNREWDFRYGE*
Ga0187879_100207312	3300017946	Peatland	MKSLSTKLVLSALGLALLAGPAVAQRPNPYLADQYLPDQYLADQYKVIVRGHIVGADPDAQIRSQLSREWDSRYGE
Ga0187855_106375911	3300018038	Peatland	MKSLSTKLVLSALGLALLAGPAVAQRPNPYLADQYLPDQYLADQYKVIVRGHIVGADPDAQIRSQLRREWDSRYGE
Ga0187859_102984081	3300018047	Peatland	MKSLSTKLVLSALGLALLAGPAVAQRPNPYLADQYLPDQYLADQYKVIVRGHIVGADPDA
Ga0193751_10025127	3300019888	Soil	MKSLSTKLFLSALGFALLAGPALAQKPADQYPVDRYKVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0193726_1000103134	3300020021	Soil	MTSLHTKLLLSVLSVALLSSPAVAQQPADQYKVIVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210407_101624182	3300020579	Soil	MKSLSTKLVLSALGVALLAGPAVAQQPADQYPADQYKVVVRGHIVGADPDAQIRTQLNREWDFRYGE
Ga0210407_107250662	3300020579	Soil	MKSLSTKLVMSALGFALLSGPALAQKPADQYPVDQTKVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210403_104753872	3300020580	Soil	MKSLSTTLVLSSLGFALLAGPAVAQQPADQYPVDQYKVVVRGHIVGADPDAQIRSQLTREWDFRYGE
Ga0210403_109170911	3300020580	Soil	MKSLSTKLVLSALGFALLSGPALAQYRANQYAADQYPTDQWTVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210399_108274582	3300020581	Soil	MKSLGTKLVLSALGLALLSGTALAQKPADQYPASQSKVVVRGQIVGADPDTQIRTQLSRQWDFRYGE
Ga0210399_109232072	3300020581	Soil	MKSLSTKLFLSALGFALLAGPALAQKPADQYPVDQWNVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210395_100036896	3300020582	Soil	MKSLSTKLVLSALGLALLAGPAVAQQPADQYPVDQYKVVVRGHIVGADPDAQIRSQLTREWDFRYGE
Ga0210401_104760892	3300020583	Soil	MKLLSTKLVLSALGLALLAEPAVAQQPADQYPVDQYKVVVRGHIVGADPDAQIRSQLTREWDFRYGE
Ga0210401_106600472	3300020583	Soil	MKSLSTKLILSALGLALLAGPALAQKPADQYPVDQYRVIVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210401_107138872	3300020583	Soil	MKSLSTKLVLSALGFALLAGPAVAQQPADQYLPDQYLADQHKVVIRGHIVGADPDAQIRSQLTREWDFRYGE
Ga0210404_104443302	3300021088	Soil	MKSLSTKLFLSALGFALLSGPALAQKPADQYPVDQWNVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210400_103598172	3300021170	Soil	MKSLSTKLFLSALGFALLAGPALAQKPADQYPVDQYKVVVRGHIVGADPDAQIRTQLSREWDFRYGE
Ga0210405_1000328516	3300021171	Soil	MKSLSTKLILSALGFALLSGSALAQKPADQYPADQSKVVVRGQIVGADPDAQIRTQLSRQWDFRYGE
Ga0210405_100441433	3300021171	Soil	MKSLNTKLILSALGFALLSGSALAQKPADQYPVDQSKVVVRGQIVGADPDARIRTQLSRQWDFRYGE
Ga0210405_102751902	3300021171	Soil	MKSLSTKLVLSALGFALLAGPAVAQQPADQYSADQYKVVIRGHIVGADPDAQIRTQLSREWDFRYGE
Ga0210405_105947381	3300021171	Soil	MKSLSTKLVLSALGFALLAGPAVAQQPADQYPVDQYKVVVRGHIVGADPDAQIRSQLTREWDFRYGE
Ga0210408_10000004124	3300021178	Soil	MTSLHTKLVLSALGIALLSGPAVARQLPDQSNVVVNGQIVGADPDAQIRTQLLREWDFRYGE
Ga0210408_100177583	3300021178	Soil	MKSLSTKLVLSALGFALLSGPALAQKPADQYPVDHYKVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210396_1000005548	3300021180	Soil	MKSLSTKLFLSALGFALLSGPALAQKPADQYPVDQSKVVVRGQIVGADPDAQIRTQLSRQWDFRYGE
Ga0210396_100919702	3300021180	Soil	MKSLSTTLVMSALGVALLAGPAAAQQPADQYSADQYKVVVRGHIVGADPDAQIRTQLSREWDFRYGE
Ga0210393_114800661	3300021401	Soil	STEDATMKSLSTKLVLSALGFALLAGPAVAQQPADQYSADQYKVVIRGHIVGADPDAQIRSQLTREWDFRYGE
Ga0210385_112466531	3300021402	Soil	QRGAVPNTEDATMKSLSTKLFLSALGFALLSGPALAQKPADQYPVDQSKVVVRGQIVGADPDAQIRTQLSRQWDFRYGE
Ga0210386_103782632	3300021406	Soil	MKSLSTKLVLSALGFALLAGPAVAQQPADQYPADQYKVIVRGQVVGADPDAQIRTQLSREWDSRYGE
Ga0210383_113713912	3300021407	Soil	MKSLSTKLVMSALGFALLSGPALAQKPADQYPIDQTKVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210394_102079382	3300021420	Soil	MKSLSTKLVLSTLGFALLASSAVAQQPADQYPADQYNVIVRGQIVGADPDAQIRSQLSREWDFRYGE
Ga0210394_107336112	3300021420	Soil	MKSLSTKLILSALGFALLAGPAVAQQPADQYRADQYKVVVRGQIVGADPDSQIRTQLRREWDFRYGE
Ga0210394_117665522	3300021420	Soil	MKSLSTKLVLSALGLALLAGPAVAQQPADQYPVDQYKVVVRGHIVGADPDAQIRSQLTRE
Ga0210392_104812952	3300021475	Soil	MKSLSTKLVMSALGFALLSGPALAQKPADQYPIDQTKVVVRGQIVGADPDAQIRTQLRREWDFRYGE
Ga0210398_101395842	3300021477	Soil	MKSLRTKLFLSALGFALLAGPALAQKPADQYPVDQYNVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210402_102951262	3300021478	Soil	MKSLSTTLVLSALGFALLAGPALAQHRADQYPADQYNVIVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210402_111659312	3300021478	Soil	MKSLSTKLNLSALGLALLAGPALAQKPADQYPVDQYRVIVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0210410_100572812	3300021479	Soil	MKSLSTKLVLSALGFALLSGSALAQKPADQYPVDQTKVVVRGQVVGADPDAQIRSQLTREWDFRYGE
Ga0210410_116565921	3300021479	Soil	MKSLSTKLILSALGFALLSGSALAQKPADQYPVDQSKVVVRGQIVGADPDAQIRTQLSRQWDFRYGE
Ga0212123_101070522	3300022557	Iron-Sulfur Acid Spring	MKSLSTKLVLSALGFALLSGSALAQKPADQYPVDQTKVVVRGQVVGADPDAQIRSQLSREWDFRYGE
Ga0212123_102706992	3300022557	Iron-Sulfur Acid Spring	MKSLSTKLFLSALGFTLLAGPALAQKPADQYPVDQYRVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0212123_103795612	3300022557	Iron-Sulfur Acid Spring	MKSPYTKLVLSAFGFALLAGPAVAQKPTGQSNVVVRGQIVGADPDAQIRTQLNREWDFRYGE
Ga0224572_10352401	3300024225	Rhizosphere	MKSLSTTLVLSALGFALLAGPAVAQQPADQYPVDQYNVVVRGHIVGADPDAQIRSQLSREWDFRYGE
Ga0224572_10379621	3300024225	Rhizosphere	MKSLRTKLVLSALGFALLAGPAVAQQPADQYLPDQYKVIVRGHIVGADPDAQIRSQLTREWDFRYGE
Ga0224572_10763432	3300024225	Rhizosphere	MKSLSTKLVLSTLGFALLSGPALAQYRADQYAADQYLPDQWTVVVRGQIVGADPDAQIRSQLSREWDFRYGE
Ga0224564_10003662	3300024271	Soil	MKSLSTTLVMSALGVALLAGPAAAQQPADQYPVDQYKVVIRGHIVGADPDAQIRTQLSREWDFRYGE
Ga0208076_10366092	3300025464	Arctic Peat Soil	MKSLGTKLVLSAVGFALLSGPALAQKPADQYPVDQYKVIVRGQIVGADPDAQIRSQLSREWDFRYGE
Ga0207692_102636271	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ALAIALLSGPAVARQWPDQSNVVVNGQIVGADPDAQIRTQLLREWDFRYGE
Ga0208859_10047802	3300027069	Forest Soil	MKSLNTKLFLSALGFALLSGPALAQKPADQYPVDQSKVVVRGQIVGADPDAQIRTQLSRQWDFRYGE
Ga0208199_10400822	3300027497	Peatlands Soil	MKSLSTKLVLSALGFALLAGPAVAQQPADQYPADQYKVVIRGQIVGADPDAQIRTQLTREWDSRYGE
Ga0208324_10640292	3300027604	Peatlands Soil	MKSLSTKLVLSALGFALLAGPAVAQRPNPYLADQYLPDQYLADQYKVVIRGQIVGADPDAQIRTQLTREWDSRYGE
Ga0209329_10234182	3300027605	Forest Soil	MKSLSTKLVLSALGFALLSGPALAQKPADQYPVDQYKVVVRGQVVGADPDAQIRTQLSREWDFRYGE
Ga0209625_10020414	3300027635	Forest Soil	MKSLSTKLVLSALGFALLAGPALAQKPADQYPVDQYKVVVRGQLVGADPDAQIRTQLSRQWDFRYGE
Ga0209626_10022132	3300027684	Forest Soil	MKSLNTKLFLSALGFALLSGSALAQKPADQYPVDQSKVVVRGQIVGADPDAQIRTQLSRQWDFRYGE
Ga0209580_1000000987	3300027842	Surface Soil	MKSLHTKLVLSALGVALLSGPAVARQLPDQSKVIVNGQTVGADPDPQIRTQLLREWDSRYGE
Ga0209517_103172432	3300027854	Peatlands Soil	MKSLSTKLVLSALGFALLAAPAVAQQPADQYPVDQYQVIVRGHIVGADPDAQIRSQLTREWDFRYGE
Ga0209517_103739591	3300027854	Peatlands Soil	MKSFSTKLVLSALGFALLAGPAVAQQPADQYPADQYKVVVRGQIVGADPDAQIRTQLTREWDSRYGE
Ga0209579_100061374	3300027869	Surface Soil	MKSLHTKLVLSALGFALLAGPALAQQPADQYPPNQYKVIVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0209579_104236872	3300027869	Surface Soil	MKSLSTKLVLSALGLALLAGPALAQRPNPYLADQYLPDQYLADQYKVVVRGHIVGADPDAQIRSQLSREWDFRYGE
Ga0209275_104250232	3300027884	Soil	MKSLSTKLILSALGLALLAGPAVAQKPADQYPVDQYRVIVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0209275_108723622	3300027884	Soil	MKSLHTKLILSALGFALLAGPAAAQQPADQYPPDQYKVIVRGQIVGADPDAQIRTQL
Ga0209380_100103792	3300027889	Soil	MTSLHTKLVLSALSVALLSSPAVAQQPADQYPADQYKVIVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0209526_100840021	3300028047	Forest Soil	MNSLNTKLLLSALGIALLAGPAVAQRLPDQSKVIVNGKVVGADPDSQIRTQLMREW
Ga0308309_114584401	3300028906	Soil	MKSLRTKLVLSALGVALLSGPALAQYAANPYAADQYPADQWTVVVRGQIVGADPDPQIRTQLSREWDFRYGE
Ga0222749_101477102	3300029636	Soil	MKSLSTKLVLSALGFALLSGPALAQKPADQYPVDQTKVVVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0310038_101949732	3300030707	Peatlands Soil	MKSLSTKLVLSALGFALLAAPAVAQQPADQYPVDQYQVIVRGHIVGADPDAQIRSQLSREWDSRYGE
Ga0265740_10081122	3300030940	Soil	SALGFALLAGPAVAQQPADQYLPDQYKVVVRGHIVGADPDAQIRSQLSREWDFRYGE
Ga0075373_100045182	3300030945	Soil	MKSLSMKLVLSALGFALLSGPALAQNRADQYAADQYLPDQWTVVVRGQIVGADPDAQIRNQLSREWDSRYGE
Ga0170834_1135671791	3300031057	Forest Soil	MKSLSTKLFLSALGFALLSGPALAQYRAVQYPADQYPPDQWTVVVRGQIVGADPDAQIRTQLGREWDFRYGE
Ga0265760_100186281	3300031090	Soil	MKSLSTKLVLSALGFALLAGPAVAQQPADQYPVDQYNVVVRGHIVGADPDAQIRSQLSREWDFRYGE
Ga0265760_101414101	3300031090	Soil	MKSLSTKLVLSALGVALLAGPAVAQQPADQYPADQYKVIVRGQVVGADPDAQIRTQLSREWDSRYGE
Ga0170823_170769461	3300031128	Forest Soil	MKSLSTKLFLSAIGFALLSGPALAQYRADQYPADQYPADQWTVVVRGQIVGADPDAQIRTQLGREWDFRYGE
Ga0170818_1004567311	3300031474	Forest Soil	MKSLSTKLILSALAFALLSGSALAQKPADQYPADQSKVIVRGQVVGADPDAQIRTQLSREWDFRYGE
Ga0265313_102557922	3300031595	Rhizosphere	MKSLGTKLVLSALGFALLSGPALAQKPADQYPVDQYKVIVRGQVVGADPDAHIRTQLSREWDFRYGE
Ga0310686_1184583321	3300031708	Soil	QGAVPNTEDATMKSLNTKLFLSAIGFALLLGPALAQKPADQYLPDQYLADQYKVVVRGQIVGADPDAQIRTQLNRQWDFRYGE
Ga0310686_1195985432	3300031708	Soil	MKSLSTKLVLSALGFALLSGPALAQKPADQYPVDQYKVVVRGHVVGADPDAQIRSQLTREWDFRYGE
Ga0307474_102990101	3300031718	Hardwood Forest Soil	VLSSLGFALLAGPAVAQQPADQYPVDQYKVVVRGHIVGADPDAQIRTQLSREWDFRYGE
Ga0311301_100924921	3300032160	Peatlands Soil	MKSLSTKLVLSALGFALLAGPALAQQPADQYPADQYNVIVRGQIVGADPDAQIRSQLSREWDFRYGE
Ga0311301_101285362	3300032160	Peatlands Soil	MQSLSTKLVLSALGVALLAGPAVAQQPADQYPADQYNVIVRGQIVGADPDAQIRTQLSREWDFRYGE
Ga0311301_106818181	3300032160	Peatlands Soil	MKSLSTKLVLSALGFALLAGPAVAQQPDQYIADQYLADQYKVVVRGHIVGADPDAQIRSQLSREWDSRYGE
Ga0311301_107813532	3300032160	Peatlands Soil	MKSLGTKLVLSALGFALLAGPAVAQQPADQYPADQYKVVVRGHVVGADPDAHIRSQLTREWDSRYGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077545

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences