Scaffold Ga0214166_1008164

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1008164
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3131
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038050	Metagenome	166	Y
F050095	Metagenome	145	N
F075693	Metagenome	118	Y
F078713	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_100816410	F075693	GAGG	MTQEDIQKAWNLMSMHNSELLLENEQLKKQLMRQSLWYAIKRAIRIWRGKE
Ga0214166_10081643	F078713	AGGAG	MSAKPIPAKEVAASIMKIMDEVAQEYPEEEREELKAVMLGQLGMALFNGPSEEKNT
Ga0214166_10081647	F050095	GGAGG	MDWIDIIVGGIVAIFIVGGCLALYADATNHPWENSDD
Ga0214166_10081648	F038050	GGA	MKRYFATIGFIMTPFFISYAFWYVIGAGISASWDLANWTLQLKFVLSIWAAGFGAMILFKLERGGK