Scaffold Ga0208223_1000366

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1000366
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11363
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004006	Metagenome / Metatranscriptome	457	Y
F033808	Metagenome / Metatranscriptome	176	Y
F050194	Metagenome / Metatranscriptome	145	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_100036612	F004006	AGGA	MTEDIEGLVTSISMNQVLIAVLEEYGKLTVPTLRFLDAGSKEKELVIDYDESVPSFTFSLRDKVEQQ
Ga0208223_100036618	F050194	N/A	GVEDDVRKGENVETATERVYAFVENKLIEKTREVEKELKNGK
Ga0208223_10003665	F033808	GAGG	MEMFLIAGIAIGFLIGYPLGLFIDKLDKKEKVKHGGR
Ga0208223_10003667	F071247	GGAGG	MGSNNKIPFNKTIIRDGRIVRIRKDGTVKADLGPYKAKHKVVK