Scaffold Ga0208326_100010

Overview

Basic Information

• Taxon OID: 3300020494
• Scaffold ID: Ga0208326_100010
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10298
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015600	Metagenome / Metatranscriptome	253	Y
F063708	Metagenome	129	Y
F099300	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208326_10001012	F015600	N/A	MNTQLEPRLQKLIDMGESGTDILHGELKNLIYEAEKEYLEIEQEEREGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAISDRIKNNE
Ga0208326_10001013	F063708	N/A	MDLNTFIEYIKLHLISLEQDLEENPASIHVVDIEGQIYATKHLLSVAEGRI
Ga0208326_10001029	F099300	GAG	MGTMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN