NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208591_1016619

Scaffold Ga0208591_1016619


Overview

Basic Information
Taxon OID3300020493 Open in IMG/M
Scaffold IDGa0208591_1016619 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 14NOV2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)966
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005531Metagenome / Metatranscriptome397Y
F043387Metagenome / Metatranscriptome156Y
F085710Metagenome / Metatranscriptome111Y
F096663Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208591_10166191F096663GAGGMKSQLEKDLDIKDSFDQMLDDSYPDVKIGYSTFTASE
Ga0208591_10166193F043387GAGGMMTKWDTIQADVADAYVYLDEEEALDKINAEAISDSDIVSLDEIIEKELTLDWEAYE
Ga0208591_10166194F005531AGAAGGMTITYTLWQGSQLLAVNQKASKPEEILAVIAELNKLGKGFTYNIREVEVNK
Ga0208591_10166195F085710AGGAMNDYYDDIYLEIYEEFGASAVSDPDYAEQLAKDKGVR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.