Scaffold Ga0208591_1016619

Overview

Basic Information

• Taxon OID: 3300020493
• Scaffold ID: Ga0208591_1016619
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 14NOV2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 966
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005531	Metagenome / Metatranscriptome	397	Y
F043387	Metagenome / Metatranscriptome	156	Y
F085710	Metagenome / Metatranscriptome	111	Y
F096663	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208591_10166191	F096663	GAGG	MKSQLEKDLDIKDSFDQMLDDSYPDVKIGYSTFTASE
Ga0208591_10166193	F043387	GAGG	MMTKWDTIQADVADAYVYLDEEEALDKINAEAISDSDIVSLDEIIEKELTLDWEAYE
Ga0208591_10166194	F005531	AGAAGG	MTITYTLWQGSQLLAVNQKASKPEEILAVIAELNKLGKGFTYNIREVEVNK
Ga0208591_10166195	F085710	AGGA	MNDYYDDIYLEIYEEFGASAVSDPDYAEQLAKDKGVR