Scaffold Ga0211579_10000146

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10000146
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57590
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064787	Metagenome	128	Y
F084340	Metagenome / Metatranscriptome	112	Y
F095604	Metagenome / Metatranscriptome	105	Y
F103872	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000014616	F064787	N/A	MSNNLDRLINSSAQDLLGEGSKMYMSLKTAILDHDQKELLKKALFFYQKDACEHYGDVPDNDKGIIESIIDTLHMKHI
Ga0211579_1000014626	F084340	GGAG	MTNSNINVTETEHPAQQHQQDVNACIHHIRDAVVDYVESEVLTPGEFVNCVRTALSDSINYHSQRAKLLKDAQDLLTNNITDKEFVQQQL
Ga0211579_1000014627	F095604	N/A	MTQEADEAARALRKLQELTNKYSNLEMGADELKQSISERINATEELKDILAKATQAKKDRESKLQ
Ga0211579_1000014633	F103872	GGAGG	MSTLHHESILETIYDELMDELTLTETLPMYSEKEITSIVYQRFEDLCQ