Metagenome / Metatranscriptome Family F103872

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Overview

Basic Information
Family ID	F103872
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	47 residues
Representative Sequence	MSCLQNETILETIYEELMEELTLTETLPMYSEKEIESICYQRFEDMCQ
Number of Associated Samples	53
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.26 %
% of genes near scaffold ends (potentially truncated)	22.77 %
% of genes from short scaffolds (< 2000 bps)	85.15 %
Associated GOLD sequencing projects	45
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (45.545 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (40.594 % of family members)
Environment Ontology (ENVO)	Unclassified (67.327 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (96.040 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.63% β-sheet: 0.00% Coil/Unstructured: 47.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01555	N6_N4_Mtase	2.97
PF04851	ResIII	1.98
PF07728	AAA_5	0.99
PF00271	Helicase_C	0.99
PF01050	MannoseP_isomer	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	2.97
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	2.97
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	2.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	52.48 %
Unclassified	root	N/A	45.54 %
cellular organisms	root	All Organisms → cellular organisms	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	12.87 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	12.87 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	12.87 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	12.87 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	9.90 %
Kyanoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	1.98 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	9.90 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.98 %
Nilusvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Nilusvirus	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Kanaloavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus	2.97 %
Salacisavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus	1.98 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.98 %
Nilusvirus ssm2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Nilusvirus → Nilusvirus ssm2	0.99 %
Palaemonvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Palaemonvirus	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
unclassified Kanaloavirus	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus	2.97 %
Prochlorococcus virus PSSM2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2	1.98 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.98 %
Prochlorococcus virus PSSM7	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Palaemonvirus → Prochlorococcus virus PSSM7	0.99 %
Nilusvirus ssm2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Nilusvirus → Nilusvirus ssm2	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Kanaloavirus sp.	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	2.97 %
Prochlorococcus virus PSSM2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2	1.98 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.98 %
Prochlorococcus virus PSSM7	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Palaemonvirus → Prochlorococcus virus PSSM7	0.99 %
Nilusvirus ssm2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Nilusvirus → Nilusvirus ssm2	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005404\|Ga0066856_10043769	All Organisms → Viruses → Predicted Viral	1956	Open in IMG/M
3300005404\|Ga0066856_10207353	Not Available	852	Open in IMG/M
3300005430\|Ga0066849_10255428	Not Available	674	Open in IMG/M
3300005430\|Ga0066849_10308730	Not Available	603	Open in IMG/M
3300006024\|Ga0066371_10047589	All Organisms → Viruses → Predicted Viral	1232	Open in IMG/M
3300006024\|Ga0066371_10087525	All Organisms → Viruses	926	Open in IMG/M
3300006166\|Ga0066836_10322156	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	927	Open in IMG/M
3300006478\|Ga0100224_1046287	All Organisms → Viruses → Predicted Viral	2045	Open in IMG/M
3300006565\|Ga0100228_1025209	All Organisms → Viruses → Predicted Viral	3332	Open in IMG/M
3300006565\|Ga0100228_1032894	All Organisms → Viruses → Predicted Viral	1304	Open in IMG/M
3300006565\|Ga0100228_1078604	Not Available	693	Open in IMG/M
3300006565\|Ga0100228_1115569	All Organisms → Viruses → Predicted Viral	1860	Open in IMG/M
3300006565\|Ga0100228_1257814	All Organisms → Viruses → Predicted Viral	1256	Open in IMG/M
3300006565\|Ga0100228_1398311	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	617	Open in IMG/M
3300006565\|Ga0100228_1419461	All Organisms → Viruses → Predicted Viral	1161	Open in IMG/M
3300006751\|Ga0098040_1065877	All Organisms → Viruses → Predicted Viral	1112	Open in IMG/M
3300006751\|Ga0098040_1134291	Not Available	736	Open in IMG/M
3300006754\|Ga0098044_1360157	All Organisms → Viruses	550	Open in IMG/M
3300006923\|Ga0098053_1058316	All Organisms → Viruses	792	Open in IMG/M
3300006928\|Ga0098041_1061708	All Organisms → Viruses → Predicted Viral	1210	Open in IMG/M
3300006928\|Ga0098041_1106567	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	905	Open in IMG/M
3300006928\|Ga0098041_1134403	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	797	Open in IMG/M
3300007338\|Ga0079242_1343537	Not Available	724	Open in IMG/M
3300008097\|Ga0111541_10195336	Not Available	847	Open in IMG/M
3300008097\|Ga0111541_10263505	Not Available	732	Open in IMG/M
3300008097\|Ga0111541_10278038	Not Available	713	Open in IMG/M
3300008097\|Ga0111541_10278197	Not Available	713	Open in IMG/M
3300009593\|Ga0115011_10003466	Not Available	10758	Open in IMG/M
3300009593\|Ga0115011_10177798	All Organisms → Viruses → Predicted Viral	1560	Open in IMG/M
3300009593\|Ga0115011_10396704	All Organisms → Viruses → Predicted Viral	1073	Open in IMG/M
3300009593\|Ga0115011_11311563	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Palaemonvirus → Prochlorococcus virus PSSM7	630	Open in IMG/M
3300009593\|Ga0115011_11352567	Not Available	622	Open in IMG/M
3300009790\|Ga0115012_10092587	All Organisms → Viruses → Predicted Viral	2102	Open in IMG/M
3300009790\|Ga0115012_10555397	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2	904	Open in IMG/M
3300009790\|Ga0115012_10890614	Not Available	727	Open in IMG/M
3300009790\|Ga0115012_11102382	Not Available	662	Open in IMG/M
3300009790\|Ga0115012_11548564	Not Available	572	Open in IMG/M
3300009794\|Ga0105189_1004603	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Nilusvirus → Nilusvirus ssm2	1282	Open in IMG/M
3300009794\|Ga0105189_1025867	Not Available	569	Open in IMG/M
3300010149\|Ga0098049_1238797	Not Available	553	Open in IMG/M
3300012952\|Ga0163180_10679263	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	793	Open in IMG/M
3300012953\|Ga0163179_10258283	All Organisms → Viruses → Predicted Viral	1360	Open in IMG/M
3300012953\|Ga0163179_11788415	Not Available	561	Open in IMG/M
3300012954\|Ga0163111_10266237	All Organisms → Viruses → Predicted Viral	1509	Open in IMG/M
3300012954\|Ga0163111_10782068	Not Available	907	Open in IMG/M
3300017720\|Ga0181383_1078170	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	888	Open in IMG/M
3300017738\|Ga0181428_1151150	Not Available	543	Open in IMG/M
3300017755\|Ga0181411_1066161	All Organisms → Viruses → Predicted Viral	1097	Open in IMG/M
3300017760\|Ga0181408_1184529	Not Available	532	Open in IMG/M
3300017765\|Ga0181413_1089676	Not Available	938	Open in IMG/M
3300017767\|Ga0181406_1033115	All Organisms → Viruses → Predicted Viral	1616	Open in IMG/M
3300020247\|Ga0211654_1039201	Not Available	733	Open in IMG/M
3300020255\|Ga0211586_1004646	All Organisms → Viruses → Predicted Viral	3131	Open in IMG/M
3300020299\|Ga0211615_1019673	Not Available	954	Open in IMG/M
3300020312\|Ga0211542_1018102	All Organisms → Viruses → Predicted Viral	1522	Open in IMG/M
3300020345\|Ga0211706_1054990	Not Available	829	Open in IMG/M
3300020377\|Ga0211647_10031910	All Organisms → Viruses → Predicted Viral	2027	Open in IMG/M
3300020395\|Ga0211705_10015278	All Organisms → Viruses → Predicted Viral	2840	Open in IMG/M
3300020395\|Ga0211705_10036872	All Organisms → Viruses → Predicted Viral	1772	Open in IMG/M
3300020404\|Ga0211659_10350258	Not Available	645	Open in IMG/M
3300020411\|Ga0211587_10040382	All Organisms → Viruses → Predicted Viral	2177	Open in IMG/M
3300020419\|Ga0211512_10398403	Not Available	620	Open in IMG/M
3300020445\|Ga0211564_10001477	All Organisms → Viruses	11950	Open in IMG/M
3300020445\|Ga0211564_10145676	All Organisms → Viruses → Predicted Viral	1178	Open in IMG/M
3300020445\|Ga0211564_10193361	All Organisms → Viruses → Predicted Viral	1008	Open in IMG/M
3300020445\|Ga0211564_10357319	Not Available	718	Open in IMG/M
3300020445\|Ga0211564_10416936	Not Available	659	Open in IMG/M
3300020445\|Ga0211564_10496009	Not Available	598	Open in IMG/M
3300020451\|Ga0211473_10654361	Not Available	529	Open in IMG/M
3300020457\|Ga0211643_10089270	All Organisms → Viruses → Predicted Viral	1522	Open in IMG/M
3300020457\|Ga0211643_10322700	Not Available	758	Open in IMG/M
3300020457\|Ga0211643_10399026	Not Available	676	Open in IMG/M
3300020457\|Ga0211643_10487736	Not Available	606	Open in IMG/M
3300020467\|Ga0211713_10108645	Not Available	1341	Open in IMG/M
3300020468\|Ga0211475_10378884	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2	688	Open in IMG/M
3300020470\|Ga0211543_10497789	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	580	Open in IMG/M
3300020470\|Ga0211543_10499091	Not Available	579	Open in IMG/M
3300020472\|Ga0211579_10000146	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	57590	Open in IMG/M
3300020472\|Ga0211579_10001803	Not Available	16391	Open in IMG/M
3300020472\|Ga0211579_10016557	All Organisms → Viruses → Predicted Viral	4851	Open in IMG/M
3300020472\|Ga0211579_10041442	All Organisms → Viruses → Predicted Viral	2894	Open in IMG/M
3300020472\|Ga0211579_10064804	All Organisms → Viruses → Predicted Viral	2237	Open in IMG/M
3300020472\|Ga0211579_10325729	Not Available	876	Open in IMG/M
3300020474\|Ga0211547_10496213	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	611	Open in IMG/M
3300025132\|Ga0209232_1077551	All Organisms → Viruses → Predicted Viral	1157	Open in IMG/M
3300026076\|Ga0208261_1032865	All Organisms → Viruses → Predicted Viral	1488	Open in IMG/M
3300026077\|Ga0208749_1022503	All Organisms → Viruses → Predicted Viral	1330	Open in IMG/M
3300026077\|Ga0208749_1100184	Not Available	603	Open in IMG/M
3300026134\|Ga0208815_1027268	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	741	Open in IMG/M
3300026257\|Ga0208407_1218613	Not Available	551	Open in IMG/M
3300027709\|Ga0209228_1151038	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	685	Open in IMG/M
3300027906\|Ga0209404_10031524	All Organisms → Viruses → Predicted Viral	2946	Open in IMG/M
3300027906\|Ga0209404_10247583	All Organisms → Viruses → Predicted Viral	1122	Open in IMG/M
3300027906\|Ga0209404_10546627	Not Available	770	Open in IMG/M
3300027906\|Ga0209404_10707357	Not Available	680	Open in IMG/M
3300027906\|Ga0209404_11145693	Not Available	535	Open in IMG/M
3300029787\|Ga0183757_1063924	Not Available	577	Open in IMG/M
3300031773\|Ga0315332_10095003	All Organisms → Viruses → Predicted Viral	1921	Open in IMG/M
3300031774\|Ga0315331_10267839	All Organisms → Viruses → Predicted Viral	1262	Open in IMG/M
3300031774\|Ga0315331_10459715	Not Available	926	Open in IMG/M
3300031774\|Ga0315331_10719746	Not Available	703	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	56.44%
Unclassified	Environmental → Aquatic → Marine → Unclassified	33.66%
Strait	Environmental → Aquatic → Marine → Strait	5.94%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	46.53%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	33.66%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	9.90%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.96%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	40.59%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	33.66%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	7.92%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	5.94%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	3.96%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.97%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	2.97%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005404	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205	Environmental	Open in IMG/M
3300005430	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69	Environmental	Open in IMG/M
3300006024	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B	Environmental	Open in IMG/M
3300006166	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91	Environmental	Open in IMG/M
3300006478	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0125m	Environmental	Open in IMG/M
3300006565	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006923	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300007338	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 DCM_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300008097	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (version 2)	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300009794	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300012952	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300017720	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23	Environmental	Open in IMG/M
3300017738	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017760	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300020247	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)	Environmental	Open in IMG/M
3300020255	Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556136-ERR599013)	Environmental	Open in IMG/M
3300020299	Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)	Environmental	Open in IMG/M
3300020312	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)	Environmental	Open in IMG/M
3300020345	Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX556079-ERR599137)	Environmental	Open in IMG/M
3300020377	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)	Environmental	Open in IMG/M
3300020395	Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020411	Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)	Environmental	Open in IMG/M
3300020419	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)	Environmental	Open in IMG/M
3300020445	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)	Environmental	Open in IMG/M
3300020451	Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)	Environmental	Open in IMG/M
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental	Open in IMG/M
3300020467	Marine microbial communities from Tara Oceans - TARA_B100000945 (ERX555966-ERR598957)	Environmental	Open in IMG/M
3300020468	Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)	Environmental	Open in IMG/M
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental	Open in IMG/M
3300020472	Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)	Environmental	Open in IMG/M
3300020474	Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300026076	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300026077	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300026134	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245 (SPAdes)	Environmental	Open in IMG/M
3300026257	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)	Environmental	Open in IMG/M
3300027709	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_150m (SPAdes)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300029787	Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172	Environmental	Open in IMG/M
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental	Open in IMG/M
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066856_100437696	3300005404	Marine	MSCIQNEEILETIWEELIEELTLTETLAKYSEQELHDITLQRFEDSCQ*
Ga0066856_102073534	3300005404	Marine	QNETILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMCQ*
Ga0066849_102554281	3300005430	Marine	QNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFEDMSR*
Ga0066849_103087303	3300005430	Marine	QNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFQDMAR*
Ga0066371_100475893	3300006024	Marine	MSCLHNEAILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAMCY*
Ga0066371_100875252	3300006024	Marine	MSCIQNEMILETIYEELMEELTLTETLPMYSEKEIERICYQRFEDMSQ*
Ga0066836_103221561	3300006166	Marine	MSSLRNEMILETIYEELMEELTQTSPFTTLLTEKEIETICYQRFEDMSR*
Ga0100224_10462872	3300006478	Marine	MSSLHHEAILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMCR*
Ga0100228_10252096	3300006565	Marine	MSCLQNEMILETIYEELMDELTLTETLPMYSEKEIESIVYQRFEDLCQ*
Ga0100228_10328945	3300006565	Marine	MSCLQNEMILETIYEELMDELTLTETLPMNSEKEIESIVYQRFEDLCQNY
Ga0100228_10786042	3300006565	Marine	MSCIHNEAILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAMCY*
Ga0100228_11155692	3300006565	Marine	MSCLQNETILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMCQ*
Ga0100228_12578144	3300006565	Marine	MSCLHNEEIYERIYEEFMEELYLTDTLDKYSEKEILKICNQRFEDYIQ*
Ga0100228_13983112	3300006565	Marine	MSCLQNETILETIYEELMEELTLTETLPMYSEKEIERICYQRFEDMCQ*
Ga0100228_14194615	3300006565	Marine	MSCLQNESILETIYEELMEELTQTAPFTTLLTEKQIEEICYQRFEDLCQ*
Ga0098040_10658772	3300006751	Marine	MSSLRNEAILETIYEELMEELTLTETLPMYSEKEIETICYQRFQDCSR*
Ga0098040_11342913	3300006751	Marine	MNRIVLIMSCLQNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFQDMAR*
Ga0098044_13601572	3300006754	Marine	MSSLRNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFQDMSR*
Ga0098053_10583162	3300006923	Marine	MSSLRNEAILETIYEELMEELTLTETLLMYSEKEIETICYQRFQDCSR*
Ga0098041_10617084	3300006928	Marine	MSSLRNEALLETIYEELMDELTLTETLPMYSEKEIESICYQRFEDMSR*
Ga0098041_11065673	3300006928	Marine	MSSLRNEALLETIYEELMEELTLTETLPMYSEKEIETICYQRFQDCSR*
Ga0098041_11344031	3300006928	Marine	MSSLRNEAILETIYEELMEELTLTETLPMYSEKEIETICYQRFQDCS
Ga0079242_13435374	3300007338	Marine	MSCLQNEALLETIYEELMEELTLTETLPMYSEKEIESICYQRLEDYSR*
Ga0111541_101953362	3300008097	Marine	MSSLRNEALLETIYEELMEELTLTETLPMYSEKEIESICYQRLEDYSR*
Ga0111541_102635052	3300008097	Marine	MSCLNNESILETIYEELMEELTLSETLPMYSEKEIEAICYQRFEGMCQ*
Ga0111541_102780382	3300008097	Marine	MSCLQNEIILETIYEELMDELTLTETLPMYSEKEIESICYQRFEDMSR*
Ga0111541_102781973	3300008097	Marine	MSCLQNESILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMCR*
Ga0115011_1000346614	3300009593	Marine	MSTLHHESILETIYDELMDELTLTETLPMYSEKEITSIVYQRFEDLCQ*
Ga0115011_101777985	3300009593	Marine	MSCLQNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFQDMAR*
Ga0115011_103967045	3300009593	Marine	MILETIYEELMEELTLTETLPMYSEKEIESICYQRFEDMSR*
Ga0115011_113115631	3300009593	Marine	MSCLQNEMILETIYEELMEELTLTETLPMYSEKEIETICYQRFQDCSR*
Ga0115011_113525671	3300009593	Marine	MSCLQNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFEDMSR*
Ga0115012_100925877	3300009790	Marine	MSSLRNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFEDMSR*
Ga0115012_105553973	3300009790	Marine	MSVLQNESLLETIYEEFMEELTLTETLHKYSEKEIESIVYQRFEDLCQ*
Ga0115012_108906141	3300009790	Marine	MILETIYEELMEELKLTETLPMYSEKEIEQICYQRFEDLCQ*
Ga0115012_111023821	3300009790	Marine	CLNNESILETIYEELMEELTLTETLPMYSEKEIEAICYQRFEDLCQ*
Ga0115012_115485642	3300009790	Marine	MILETIYEELMEELTLTETLPMYSEKEIERICYQRFEDMCQ*
Ga0105189_10046032	3300009794	Marine Oceanic	MSTLNHESILETIYEELMEELTQTAPFTTLLTEKQIEEICYQRFEDLCQ*
Ga0105189_10258671	3300009794	Marine Oceanic	MSCLHNEAILETIYDEFMQELIDTETLAMYSEKEIENICYQRFEAMCY*
Ga0098049_12387972	3300010149	Marine	SLRNEAILETIYEELMEELTLTETLPMYSEKEIETICYQRFQDCSR*
Ga0163180_106792632	3300012952	Seawater	MSCLQNETILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMCR*
Ga0163179_102582833	3300012953	Seawater	MSCLQNESILETIYEELMEELTLTETLPMYSEKEIESIVYQRFEDMSR*
Ga0163179_117884153	3300012953	Seawater	MSCLQNETILETIYEELMEELTLTETLPMYSEKEIEQICY
Ga0163111_102662374	3300012954	Surface Seawater	MSCLQNEMILENIYEELMEELTLTETLPMYSEKEIERICYQRFEDMCH*
Ga0163111_107820682	3300012954	Surface Seawater	MILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMSR*
Ga0181383_10781701	3300017720	Seawater	MSSLRNEAILETIYEELMEELTLTETLPMYSEKEIETI
Ga0181428_11511503	3300017738	Seawater	MSCIQNEMILETIYEELMDELTLTETLPMYSEKEIESIC
Ga0181411_10661612	3300017755	Seawater	MSCLHNEAILETIYDEFMQELIDTETLAMYSEKEIENICYQRFESMCY
Ga0181408_11845292	3300017760	Seawater	MSSLRNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFEDMSR
Ga0181413_10896761	3300017765	Seawater	ILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAMCY
Ga0181406_10331151	3300017767	Seawater	MSCLHNEAILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAM
Ga0211654_10392013	3300020247	Marine	MSCIQNEEKLESIWEELIEELTLTETLAKYSEQELHDITLQRFEDSCQ
Ga0211586_10046464	3300020255	Marine	MSCLNNESILETIYEELMEELTLTETLPMYSEKEIEAICYQRFEDMCQ
Ga0211615_10196731	3300020299	Marine	MSCLHNEAILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAMCY
Ga0211542_10181022	3300020312	Marine	MSVLHHESILETIYEEFMEELTLTETLPMYSEKEIESIVYQRFEDLCQ
Ga0211706_10549901	3300020345	Marine	HNEAILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAMCY
Ga0211647_100319106	3300020377	Marine	MSSLRNEALLETIYEELMEELTLTETLPMYSEKEIESICYQRFEDLCQ
Ga0211705_100152786	3300020395	Marine	MSCIHNEAILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAMCY
Ga0211705_100368727	3300020395	Marine	ILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMSR
Ga0211659_103502581	3300020404	Marine	MSCLHNEAILETIYDEFMQELIETETLAMYSEKEIEKICYQRFEAMSY
Ga0211587_100403821	3300020411	Marine	MSCLQNEMILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMCQ
Ga0211512_103984031	3300020419	Marine	MSCLQNETILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMCR
Ga0211564_1000147719	3300020445	Marine	MSCIQNEEILETIWEELIEELTLTETLAKYSEQELHDITLQRFEDSCQ
Ga0211564_101456764	3300020445	Marine	MSCLQNESILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMSR
Ga0211564_101933612	3300020445	Marine	MSCLQNEALLETIYEEFMEELTLTETLYKYSEKEIESICYQRFQDMCQ
Ga0211564_103573193	3300020445	Marine	MSTLHHESILETIYDELMDELTLTETLPMYSEKEITSIVYQRFQDLCQ
Ga0211564_104169362	3300020445	Marine	MSCLQNEAILETIYEEIMEELTLTETLPMYSEKEIEALCYQKFEDMCQ
Ga0211564_104960093	3300020445	Marine	MSCIQNESILETIYEEIMEELTLTETLPMYSEKEIEAL
Ga0211473_106543612	3300020451	Marine	MSCLQNETILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDLSR
Ga0211643_100892704	3300020457	Marine	MSCLQNEMILETIYEELMDELTLTETLPMYSEKEIESIVYQRFEDMSRXNY
Ga0211643_103227001	3300020457	Marine	FYTMSCLHNEAILETIYDEFMQELIETETLAMYSEKEIENICYQRFEDMCY
Ga0211643_103990262	3300020457	Marine	MSCLHNEAILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAMCH
Ga0211643_104877362	3300020457	Marine	MSCIHNEAILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAMC
Ga0211713_101086451	3300020467	Marine	EFYTMSCLHNEAILETIYDEFMQELIDTETLAMYSEKEIENICYQRFEAMCY
Ga0211475_103788844	3300020468	Marine	MSCINNEALYERIYEEFMEELTLTDTLDKYSEREILKICNQRFEDM
Ga0211543_104977893	3300020470	Marine	MSCLQNEMILETIYEELMEELTLTETLPMYSEKEIERICYQRFEDLAR
Ga0211543_104990911	3300020470	Marine	MSCLQNEMILETIYDELMDELTLTETLPMYSEKEIESIVYQRFEDLSR
Ga0211579_1000014633	3300020472	Marine	MSTLHHESILETIYDELMDELTLTETLPMYSEKEITSIVYQRFEDLCQ
Ga0211579_1000180321	3300020472	Marine	MSSLRNEAILETIYEEIMEELTLTETLPMYSEKEIEALCYQKFEDMCH
Ga0211579_1001655711	3300020472	Marine	MSCLQNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFQDLSQ
Ga0211579_100414422	3300020472	Marine	MSCLNNESILETIYEELMEELTLSETLPMYSEKEIEAICYQRFEGMCQ
Ga0211579_100648048	3300020472	Marine	MSCLHNEEIYERIYEEFMEELYLTDTLDKYSEKEILKICNQRFEDLCQ
Ga0211579_103257294	3300020472	Marine	MSCLQNESILETIYEELMEELTLTETLPMYSEKEIESIVYQRFEDMSR
Ga0211547_104962131	3300020474	Marine	IIMSCLQNETILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDLSR
Ga0209232_10775515	3300025132	Marine	MSCLQNETILETIYEELMEELTLTAPFTTLLTEKEIESICYQRFEDMSR
Ga0208261_10328652	3300026076	Marine	MSSLRNEALLETIYEELMEELTLTETLPMYSEKEIESICYQRLEDYSR
Ga0208749_10225032	3300026077	Marine	MSCIQNEMILETIYEELMEELTLTETLPMYSEKEIERICYQRFEDMSQ
Ga0208749_11001842	3300026077	Marine	MSCLQNETILETIYEELMEELTLTETLPMYSEKEIESICYQRFEDMCQ
Ga0208815_10272682	3300026134	Marine Oceanic	MSTLNHESILETIYEELMEELTQTAPFTTLLTEKQIEEICYQRFEDLCQ
Ga0208407_12186131	3300026257	Marine	IMSCLQNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFQDMAR
Ga0209228_11510383	3300027709	Marine	LRRLTMSSLNNEMILETIYEELMEELTLTSPFTTLLTEKEIETICYQRFEDMSR
Ga0209404_100315243	3300027906	Marine	MSVLQNESLLETIYEEFMEELTLTETLHKYSEKEIESIVYQRFEDLCQ
Ga0209404_102475832	3300027906	Marine	MSCLQNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFQDMAR
Ga0209404_105466271	3300027906	Marine	MSCLQNEMILETIYEELMEELTLTETLPMYSEKEIQEICYQRFEDLAR
Ga0209404_107073571	3300027906	Marine	MSSLRNEAILETIYEELMEELTLTETLPMYSEKEIETICYQRFQDCSR
Ga0209404_111456931	3300027906	Marine	IMSSLQNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFEDMSR
Ga0183757_10639242	3300029787	Marine	MSCLQNETILETIYEELMEELTLTETLPMYSEKEIEQICYQRFEDMCQ
Ga0315332_100950038	3300031773	Seawater	MSCIQNEMILETIYEELMDELTLTETLPMYSEKEIESICYQRFEDMSR
Ga0315331_102678392	3300031774	Seawater	MSCIQNETILETIYEELMEELTLTETLPMYSEKEIESICYQRFEDMCQ
Ga0315331_104597151	3300031774	Seawater	MSCLHNETILETIYDEFMQELIETETLAMYSEKEIENICYQRFEAMCY
Ga0315331_107197463	3300031774	Seawater	MSSLNNEALLETIYEELMDELTLTETLPMYSEKEIESICYQRFEDMSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103872

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences