NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10034029

Scaffold Ga0211577_10034029


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10034029 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3839
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027199Metagenome / Metatranscriptome195Y
F105328Metagenome / Metatranscriptome100Y
F105331Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211577_100340295F105328AGGAGGMDQQNNLWEQLEAHMHHNLGRYGLEMMDRLLDLKEQAEDRGMCPPDTEERQEQFEQTHG
Ga0211577_100340296F027199N/AMDHLKELITHYMEFHMNEFDCSEQTEEETFEIVMENVESMVENYSYSDYNKEDK
Ga0211577_100340297F105331GAGGMEDLKKLGLKMEKEMKDSLVYDEKMGFWYDKEDEESIYTEEGIRLSVYEDLKDTLNYLYSECAY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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