NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105328

Metagenome / Metatranscriptome Family F105328

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105328
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 60 residues
Representative Sequence MDQDNNIWEQLETHMHENLGIYGLKMMDAFLDLKEQAEDCGMCPPDTPERQERFEQMHG
Number of Associated Samples 82
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 13.00 %
% of genes near scaffold ends (potentially truncated) 27.00 %
% of genes from short scaffolds (< 2000 bps) 68.00 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (65.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(18.000 % of family members)
Environment Ontology (ENVO) Unclassified
(71.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(96.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.87%    β-sheet: 0.00%    Coil/Unstructured: 47.13%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.64
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF10431ClpB_D2-small 2.00
PF13481AAA_25 1.00
PF12850Metallophos_2 1.00
PF00551Formyl_trans_N 1.00
PF13671AAA_33 1.00
PF00719Pyrophosphatase 1.00
PF06067DUF932 1.00
PF04545Sigma70_r4 1.00
PF00685Sulfotransfer_1 1.00
PF01467CTP_transf_like 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0221Inorganic pyrophosphataseEnergy production and conversion [C] 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A65.00 %
All OrganismsrootAll Organisms35.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10091844All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1296Open in IMG/M
3300000159|LPaug08P2610mDRAFT_c1009770All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1207Open in IMG/M
3300001349|JGI20160J14292_10124472All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium858Open in IMG/M
3300004097|Ga0055584_100135330Not Available2475Open in IMG/M
3300004097|Ga0055584_100193974Not Available2061Open in IMG/M
3300004457|Ga0066224_1240395Not Available984Open in IMG/M
3300005427|Ga0066851_10180797All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium667Open in IMG/M
3300005605|Ga0066850_10116060All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1002Open in IMG/M
3300005608|Ga0066840_10000623All Organisms → cellular organisms → Bacteria5577Open in IMG/M
3300005837|Ga0078893_10980568Not Available504Open in IMG/M
3300005837|Ga0078893_11047642All Organisms → Viruses → Predicted Viral2503Open in IMG/M
3300005934|Ga0066377_10153399Not Available701Open in IMG/M
3300005942|Ga0070742_10044953Not Available1195Open in IMG/M
3300006025|Ga0075474_10028872Not Available1963Open in IMG/M
3300006332|Ga0068500_1605830All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium551Open in IMG/M
3300006916|Ga0070750_10030890Not Available2666Open in IMG/M
3300006919|Ga0070746_10350199Not Available670Open in IMG/M
3300007539|Ga0099849_1005781Not Available5652Open in IMG/M
3300007554|Ga0102820_1007529Not Available2825Open in IMG/M
3300007692|Ga0102823_1021501Not Available1785Open in IMG/M
3300008012|Ga0075480_10098786Not Available1638Open in IMG/M
3300008993|Ga0104258_1060644All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium706Open in IMG/M
3300009080|Ga0102815_10673599All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium584Open in IMG/M
3300009086|Ga0102812_10185854All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1135Open in IMG/M
3300009130|Ga0118729_1022826Not Available4191Open in IMG/M
3300009420|Ga0114994_10005003Not Available9651Open in IMG/M
3300009420|Ga0114994_10642221All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium694Open in IMG/M
3300009438|Ga0115559_1301357All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium562Open in IMG/M
3300009599|Ga0115103_1103917All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1667Open in IMG/M
3300009677|Ga0115104_10353352All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium734Open in IMG/M
3300009677|Ga0115104_10897510All Organisms → Viruses → Predicted Viral2412Open in IMG/M
3300010297|Ga0129345_1199778Not Available710Open in IMG/M
3300012920|Ga0160423_10012871Not Available6452Open in IMG/M
3300012920|Ga0160423_11173027Not Available513Open in IMG/M
3300012928|Ga0163110_10033545All Organisms → Viruses → Predicted Viral3131Open in IMG/M
3300012928|Ga0163110_11328317Not Available580Open in IMG/M
3300012928|Ga0163110_11529941Not Available542Open in IMG/M
3300013188|Ga0116834_1030366Not Available955Open in IMG/M
3300014030|Ga0116816_1062708Not Available513Open in IMG/M
3300017706|Ga0181377_1008043Not Available2646Open in IMG/M
3300017706|Ga0181377_1019631Not Available1492Open in IMG/M
3300017706|Ga0181377_1078599Not Available591Open in IMG/M
3300017710|Ga0181403_1119008Not Available551Open in IMG/M
3300017717|Ga0181404_1042027All Organisms → Viruses → Predicted Viral1162Open in IMG/M
3300017720|Ga0181383_1071605Not Available931Open in IMG/M
3300017725|Ga0181398_1008660All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium2620Open in IMG/M
3300017727|Ga0181401_1010433Not Available2948Open in IMG/M
3300017727|Ga0181401_1045223Not Available1221Open in IMG/M
3300017741|Ga0181421_1024437Not Available1645Open in IMG/M
3300017742|Ga0181399_1012556Not Available2445Open in IMG/M
3300017742|Ga0181399_1047800All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1123Open in IMG/M
3300017742|Ga0181399_1167043Not Available524Open in IMG/M
3300017743|Ga0181402_1006120All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium3820Open in IMG/M
3300017745|Ga0181427_1181692Not Available507Open in IMG/M
3300017746|Ga0181389_1011770All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium2873Open in IMG/M
3300017746|Ga0181389_1095966Not Available820Open in IMG/M
3300017753|Ga0181407_1063535Not Available954Open in IMG/M
3300017760|Ga0181408_1017838All Organisms → Viruses → Predicted Viral1972Open in IMG/M
3300017782|Ga0181380_1001180Not Available11557Open in IMG/M
3300017786|Ga0181424_10378470Not Available578Open in IMG/M
3300017958|Ga0181582_10945110Not Available503Open in IMG/M
3300017986|Ga0181569_10649262Not Available702Open in IMG/M
3300020166|Ga0206128_1007534Not Available7542Open in IMG/M
3300020185|Ga0206131_10229449All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium884Open in IMG/M
3300020374|Ga0211477_10165134Not Available785Open in IMG/M
3300020401|Ga0211617_10011176Not Available3931Open in IMG/M
3300020420|Ga0211580_10042514Not Available1948Open in IMG/M
3300020442|Ga0211559_10192893Not Available963Open in IMG/M
3300020469|Ga0211577_10034029Not Available3839Open in IMG/M
3300020469|Ga0211577_10229749All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1205Open in IMG/M
3300020471|Ga0211614_10525985Not Available524Open in IMG/M
3300021957|Ga0222717_10008445All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium7261Open in IMG/M
3300021957|Ga0222717_10096010Not Available1857Open in IMG/M
3300021958|Ga0222718_10000012Not Available228717Open in IMG/M
3300021958|Ga0222718_10023174Not Available4264Open in IMG/M
(restricted) 3300023109|Ga0233432_10097154Not Available1667Open in IMG/M
3300023709|Ga0232122_1110830Not Available627Open in IMG/M
3300024235|Ga0228665_1000004All Organisms → cellular organisms → Bacteria77453Open in IMG/M
3300024235|Ga0228665_1006056All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium2385Open in IMG/M
3300024235|Ga0228665_1018791Not Available1403Open in IMG/M
3300024322|Ga0228656_1030093Not Available1239Open in IMG/M
3300024332|Ga0228659_1036451Not Available1120Open in IMG/M
3300025653|Ga0208428_1132960Not Available678Open in IMG/M
3300025658|Ga0209659_1138907All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium742Open in IMG/M
3300025674|Ga0208162_1017303Not Available2851Open in IMG/M
3300025719|Ga0209252_1221459Not Available572Open in IMG/M
3300025759|Ga0208899_1161463Not Available754Open in IMG/M
3300025810|Ga0208543_1117969Not Available628Open in IMG/M
3300025876|Ga0209223_10073637Not Available1965Open in IMG/M
3300026085|Ga0208880_1031067Not Available1150Open in IMG/M
3300026495|Ga0247571_1013508All Organisms → Viruses → Predicted Viral1643Open in IMG/M
3300027197|Ga0208922_1068810Not Available586Open in IMG/M
3300027416|Ga0207994_1069339Not Available712Open in IMG/M
3300027813|Ga0209090_10089429All Organisms → Viruses → Predicted Viral1680Open in IMG/M
3300028128|Ga0228645_1000001All Organisms → cellular organisms → Bacteria110601Open in IMG/M
3300028197|Ga0257110_1347752All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium519Open in IMG/M
3300028198|Ga0257121_1037758Not Available2103Open in IMG/M
3300031519|Ga0307488_10189541All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1404Open in IMG/M
3300031766|Ga0315322_10061571All Organisms → Viruses → Predicted Viral2743Open in IMG/M
3300031851|Ga0315320_10048763Not Available3311Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater18.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine13.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine10.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous9.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater7.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater5.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine5.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine4.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh3.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine2.00%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water2.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.00%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.00%
Ocean WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water1.00%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000159Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10mEnvironmentalOpen in IMG/M
3300001349Pelagic Microbial community sample from North Sea - COGITO 998_met_10EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005427Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65EnvironmentalOpen in IMG/M
3300005605Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67EnvironmentalOpen in IMG/M
3300005608Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84AEnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300005934Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_BEnvironmentalOpen in IMG/M
3300005942Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006332Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200mEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007554Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709EnvironmentalOpen in IMG/M
3300007692Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743EnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300008993Marine microbial communities from eastern North Pacific Ocean - P1 free-livingEnvironmentalOpen in IMG/M
3300009080Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009130Combined Assembly of Gp0139511, Gp0139512EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300009599Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009677Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300013188Marine hypoxic microbial communities from the Gulf of Mexico, USA - 6m_Station1_GOM_MetagenomeEnvironmentalOpen in IMG/M
3300014030Marine hypoxic microbial communities from the Gulf of Mexico, USA - 11m_Station1_GOM_MetagenomeEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017741Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300017958Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020374Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)EnvironmentalOpen in IMG/M
3300020401Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)EnvironmentalOpen in IMG/M
3300020420Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)EnvironmentalOpen in IMG/M
3300020442Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300020471Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023709Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024235Seawater microbial communities from Monterey Bay, California, United States - 79DEnvironmentalOpen in IMG/M
3300024322Seawater microbial communities from Monterey Bay, California, United States - 68DEnvironmentalOpen in IMG/M
3300024332Seawater microbial communities from Monterey Bay, California, United States - 73DEnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025658Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025719Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300026085Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)EnvironmentalOpen in IMG/M
3300026495Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 24R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027197Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 (SPAdes)EnvironmentalOpen in IMG/M
3300027416Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300028128Seawater microbial communities from Monterey Bay, California, United States - 57DEnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300028198Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1009184413300000101MarineEKNIWEQLEEHIHDNLGTYGLKMQDQFLLLKEDAEDLGMCPPDTEERQSKLEEMYG*
LPaug08P2610mDRAFT_100977033300000159MarineMEKNIWEQLEEHIQDNLGTYGLNMMDRFLDIKEIAEDLGLCPDDTEERQTELENR*
JGI20160J14292_1012447223300001349Pelagic MarineMEKNIWEQLEEHIHDNLGTYGLNMMDRFLDIKEIAEDLGMCPDDTEERQTELENR*
Ga0055584_10013533073300004097Pelagic MarineMNETDNIWEQMETHMQQNLGTYGLHAMSVFLELKELAEDRGMCPPDTPERQDQLEQMHGTSCASGQNTI*
Ga0055584_10019397433300004097Pelagic MarineMNQQNNIWEQLEAHMHDQLGIYGLEMMDAFLDLKEQAEDKGMCPMDTPQRQDQFEQMHGQAHAPGR*
Ga0066224_124039513300004457MarineMDQDNNIWEQMETHMHDNLGIYGLKMMDAFLDLKEQAEDCKMCPPDTSERQEQFEHHALPRFSEWIA*
Ga0066851_1018079713300005427MarineMNVWEQLEEHIQDNLGYYGLKFQDRFLELKEHAEDLGLCPPDTPERQD
Ga0066850_1011606033300005605MarineMNVWEQLEEHIQDNLGYYGLKFQDRFLELKEHAEDLGLCPPDTPERQDKLAEQNG*
Ga0066840_10000623133300005608MarineMNSDNIWEQLEIHMRQNLGIYGLKMMDKFLELKEQAEDCNMCPADTEERQTQLEQNYG*
Ga0078893_1098056823300005837Marine Surface WaterMEDENIWEQLETHMHEYLGIYGLNMLHAFLDLKEKAEDCGMCPPDTPERQEKFEYMHG*
Ga0078893_1104764223300005837Marine Surface WaterMNSDNIWEQMETHMQENLGTYGLEMFNIFLHLKECAEDCGMCPEDTPERQEQFEQMNGEAFRPGTTQGE*
Ga0066377_1015339933300005934MarineMDQDNNIWEQLETHMHENLGIYGLGMMDRFLDLKEQAEDCGMCPPDSEERQQRFEQMHGEAHAPGSR*
Ga0070742_1004495353300005942EstuarineNIIMEDENIWEQLETHMHDNLGIYGLKMMDAFLTLKEQAEDCGMCPEDTTERQTQLEQR*
Ga0075474_1002887243300006025AqueousMDQDNNIWEQMETHMHENLGTYGLKMMDAFLDLKEQAEDCGMCPADTPERQQRFEQMNGAAHAPGSRQPSE*
Ga0068500_160583033300006332MarineMEIDMNEWEQMEEHIHNNLGLYGLTFLERFLEVKETAEDLGLC
Ga0070750_1003089083300006916AqueousMEDENIWEQLETHMHENLGTYGLKMMDAFLNLKEQAEDRGMCPPDTPERQEQFEHMHG*
Ga0070746_1035019923300006919AqueousMEDENIWEQLETHMHENMGTYGLKMMDAFLNLKEQAEDRGMCPPDTPERQEQFEHMHG*
Ga0099849_1005781143300007539AqueousMDEENNIWEQMETHMHENLGTYGLEMMNIFLHLKEQAEDCGMCPEDTPERQERFEQMNGLAHAPGSRQPSE*
Ga0102820_100752973300007554EstuarineMEDENIWEQLETHMHDNLGIYGLKMMDAFLTLKEQAEDCGMCPEDTTERQTQLEQR*
Ga0102823_102150143300007692EstuarineMEDENIWEQLETHMHDNLGIYGLKMMDAFLTLKEQAEDCGMCPEDTAERQTQLEQR*
Ga0075480_1009878613300008012AqueousMDQDNNIWEQMETHMHENLGTYGLKMMDAFLDLKEQAEDCGMCPADTPERQQR
Ga0104258_106064413300008993Ocean WaterMETNIWEQLEEHINDNLGTYGLQMMDQFLTLKEQAEDCGMCPPDTPERQTRFEQQHG*
Ga0102815_1067359923300009080EstuarineMEKNIWEQLEEHINDNLGTYGLELMDKFLHLKEHAEDMGMCPPDTEERQTELENR*
Ga0102812_1018585433300009086EstuarineMEKNIWEQLEEHINDNLGTYGLELMDRFLHLKEHAEDMGMCPPDTEERQTELENR*
Ga0118729_102282653300009130MarineMDQENNIWEQMETHMNQNLGTYGLDMMNIFLHLKESAEDCGMCPPDTPERQQQFEDMHGEASRPASR*
Ga0114994_1000500353300009420MarineMEKNIWEQLEEHINDNLGTYGLNMMDRFLDVKEIAEDLGLCPDDTEERQTELENR*
Ga0114994_1064222123300009420MarineMEKNIWEQLEEHINDNLGTYGLNMMDRFLDIKEIAEDLGLCPDDTEERQTELENR*
Ga0115559_130135733300009438Pelagic MarineMEKNIWEQLEEHIHDNLGTYGLNMMDRFLDIKEIAEDLGMCPDDTEERQTE
Ga0115103_110391733300009599MarineMEKNIWEQLEEHINDNLGTYGLELMDRFLHLKEDAEDLGMCPEDTEERQTELENR*
Ga0115104_1035335233300009677MarineWEQLETHMHDNLGVYGLQMMDRFLDLKEQAEDCGMCPADTPERQEQFEQMHG*
Ga0115104_1089751073300009677MarineSDNIWEQLEIHMHEHLGIYGLKMMDEFLKLKEQAEDCAMCPEDTPERQDQLEQHYG*
Ga0129345_119977813300010297Freshwater To Marine Saline GradientMNEDNNIWEQLETHMHENLGIYGLKMMDAFLNLKEQAEDCGMCPPDTPERQERFEQMHG*
Ga0160423_1001287163300012920Surface SeawaterMDQDSNIWEQLETHMHQNLGTYGLNMMNAFLDLKEQAEDCGMCPPDTPERQQRFEHMHGLAHVPGSR*
Ga0160423_1117302733300012920Surface SeawaterMDQEDNIWEQMETHMHENLGIYGLKMMDAFLNLKEKAEDCGMCPPDTPERQERFE
Ga0163110_1003354593300012928Surface SeawaterMNSDNIWEQLEIHMHEHLGIYGLKMMDAFLKLKEQAEDCGMCPEDTPERQDQLENLYG*
Ga0163110_1132831713300012928Surface SeawaterMDQDNNIWEQLETHMHEYLGIYGLEMLSEFINLKEKAEDCGMCPPDTPERHER
Ga0163110_1152994123300012928Surface SeawaterMNQDNNIWEQLETHMHENLGIYGLKMMDRFLELKEQAEDCGMCPEDTPERQEQLENLY*
Ga0116834_103036633300013188MarineMDQDNNIWEQLETHMHENLGIYGLKMMDAFLDLKEQAEDCGMCPPDTPERQERFEQMHG*
Ga0116816_106270813300014030MarineMDEQNNIWEQMETHMHQNLGVYGLNMMNTFLDLKERAEDRGMCPPDTPERQQQFEHLHG
Ga0181377_100804323300017706MarineMEQTNNIWEQLETHMQNRLGIYGLDMMDQFLDLKEQAEDRGMCPPDTEERHTQLEQHDQPSCAYDQNTL
Ga0181377_101963143300017706MarineMDQQNNIWEQLETHMHNRLGIYGLKMMDAFLKLKEQAEDRGMCPPDTEERQDQLERRIYR
Ga0181377_107859923300017706MarineMETHMQQNLGTYGLEMMNIFLHLKESAEDCGMCPEDTPERQEQFEQMHGEAHRPGSR
Ga0181403_111900813300017710SeawaterIMDQDNNIWEQMETHMHDNLGRYGLKMMDAFLQLKEQAEDCGMCPPDTPERQERFEQQHG
Ga0181404_104202713300017717SeawaterMNQDNNIWEQLETHMHEYLGIYGLEMLSVFVDLKERAEDCGMCPADTEERQEQFEQMHGEAHVPGS
Ga0181383_107160513300017720SeawaterQENNIWEQMETHMHDNLGIYGLHALSVFLDLKELAEDRGMCPADTPERQDQLEQRYG
Ga0181398_100866073300017725SeawaterMDETNNIWEQLETHMHDNLGVYGLQMMDRFLDLKESAEDCGMCPPDTPERQEQFEQQHG
Ga0181401_101043343300017727SeawaterMNDENIWEQLETHMHDNLGTYGLKMMDAFLTLKEQAEDCGMCPPDTAERQTRFEQQHG
Ga0181401_104522333300017727SeawaterMDHDNNIWEQLETHMYDNLGRYGLKMMDAFLDLKEQAEDRGMCPPDTPERQLQFEPQHG
Ga0181421_102443753300017741SeawaterNMDQENNIWELLETHMHENLGVYGLQMMDEFINLKEKAEDCGMCPPDTPERQEQFEQMHG
Ga0181399_101255653300017742SeawaterMNDENIWEQLETHMHDNLGTYGLKMMDAFLTLKEQAEDRGMCPEDTPERQEQFEHLNG
Ga0181399_104780023300017742SeawaterMEKNIWEQLEEHINDNLGTYGLELMDRFLHLKEDAEDLGMCPEDTEERQTELENR
Ga0181399_116704323300017742SeawaterLETHMHQNLGIYGLKMMDAFLDLKEQAEDCNMCPADTPERQERLEQMYG
Ga0181402_100612033300017743SeawaterMDETNNIWEQLETHMHDNLGIYGLQMMDRFLDLKESAEDCGMCPPDTPERQEQFEQQHG
Ga0181427_118169233300017745SeawaterMDQENNIWEQMETHMHDNLGIYGLHALSVFLDLKELAEDRGMCPPDTPERQERFEQMHG
Ga0181389_101177053300017746SeawaterMEKNIWEQLEEHINDNLGTYGLELMDRFLHLKEDAEDLGMCPEDTEERQTELEQMHGEAHVPGSR
Ga0181389_109596613300017746SeawaterVALHKRIDDNTIMDQDNNIWEQLETHMHDNLGTYGLKMMDAFLTLKEQAEDCGMCPPDTAERQTQFEQQHG
Ga0181407_106353543300017753SeawaterMEDENIWEQLETHMHQNLGIYGLEMFNIFLHLKEQAEDCGMCPEDTPERQERLGQNELIEACDGEGKFEQ
Ga0181408_101783843300017760SeawaterMETHMHENLGIYGLQMMDAFLDLKERAEDCNMCPADTPERQERLEQMHG
Ga0181380_100118083300017782SeawaterMDQDNNIWEQLETHMHDNLGRYGLKMMDQFLTLKEQAEDCGMCPPDTPERQTRFEQQHG
Ga0181424_1037847013300017786SeawaterMNSDNIWEQMETHMQENLGTYGLEMFNIFLHLKECAEDCGMCPEDTPERQEQFEQMNGEAFRPG
Ga0181582_1094511033300017958Salt MarshMNDENIWEQLETHMHEHLGIYGLKMMDAFLTLKEQAEDCGMCPPDTPERQERFEQMHG
Ga0181569_1064926223300017986Salt MarshMDQQNNIWEQLETHMHENLGIYGLEMMDAFLNLKEQAEDRGMCPEDTPERQDQLEQHTY
Ga0206128_1007534103300020166SeawaterMDENIWEQLEIHIHENLGTYGLEMMDRFLDIKEIAEDLGLCPADTAERQDRFEFRNFG
Ga0206131_1022944923300020185SeawaterMEKNIWEQLEEHIHDNLGTYGLNMMDRFLDIKEIAEDLGMCPDDTEERQTELENR
Ga0211477_1016513433300020374MarineMNQDNNIWEQLETHMHENLGTYGLEMMDRFLDLKEQAEDCGMCPPDTPERQERFED
Ga0211617_1001117663300020401MarineMDQDNNIWEQLETHMHEYLGIYGLEMLNAFVDLKEQAEDRGMCPPDSAERQEQFEQMHG
Ga0211580_1004251453300020420MarineMDQDNNIWEQLETHMHEYLGIYGLEMLSEFINLKEKAEDCGMCPPDTPERQERFEEMHG
Ga0211559_1019289323300020442MarineMNDDNIWEQLETHMHEYLGIYGLEMMNDFLLLKERAEDCGMCPEDTEERQERFEQLHGEAHVPGSRPATA
Ga0211577_1003402953300020469MarineMDQQNNLWEQLEAHMHHNLGRYGLEMMDRLLDLKEQAEDRGMCPPDTEERQEQFEQTHG
Ga0211577_1022974923300020469MarineVKQFVAQLNVCAYNHGMNSENIWEQLEIHMRENLGIYGLQMMDTFLDLKEQAEDCKMCPPDTPERQDQIENLYG
Ga0211614_1052598513300020471MarineLETHIHEYLGIYGLEMLSEFIDLKEKAEDCGMCPPDTPERHERWEKMHG
Ga0222717_1000844553300021957Estuarine WaterMEERNLWEQLETHMHENLGTYGLHALSVFLDLKELAEDRGMCPPDTPERHERWEQMHG
Ga0222717_1009601043300021957Estuarine WaterVHLSSRHYYHNMEEENNIWEQMETHMHENLGTYGLKMMDAFLDLKESAEDCGMCPQDTPERQERFEQMNGEAHAPGSRQPSE
Ga0222718_100000121483300021958Estuarine WaterMEEENNIWEQMETHMHENLGTYGLKMMDAFLDLKESAEDCGMCPQDTPERQERFEQMNGEAHAPGSRQPSE
Ga0222718_1002317453300021958Estuarine WaterMNQQNNIWEQLEAHMHDQLGIYGLEMMDAFLDLKEQAEDKGMCPMDTPQRQDQFEQMHGQAHAPGR
(restricted) Ga0233432_1009715433300023109SeawaterMEDENIWEQLETHMHDNLGIYGLKMMDAFLTLKEQAEDCGMCPEDTTERQTQLEQR
Ga0232122_111083013300023709Salt MarshIWEQLETHMHENLGTYGLKMMDAFLDLKEQAEDCGMCPPDTPERQTRFEQMHG
Ga0228665_100000463300024235SeawaterMLISYNHVMNDENIWEQLETHMHQNLGIYGLKMMDKFLELKEQAEDCNMCPPDTPERQDQLENLQY
Ga0228665_100605643300024235SeawaterMDQENNIWEQLETHMHENLGTYGLKMMDAFLELKEQAEDCNMCPPDTPERQERFEQMHG
Ga0228665_101879143300024235SeawaterMDQQNNIWEQMETHMHQNLGTYGLKMMDAFLTLKEQAEDCGMCPEDTPERQQQFEQQHGEAHVPGSR
Ga0228656_103009353300024322SeawaterMDQQNNIWEQMETHMHRNLGTYGLKMMDAFLTLKEQAEDCGMCPEDTPERQQQFEQQHGEAHVPGSR
Ga0228659_103645153300024332SeawaterMDQENNIWEQLETHMHENLGTYGLKMMDAFLELKEQAEDCNMCPPDTPERQERF
Ga0208428_113296013300025653AqueousMDQDNNIWEQMETHMHENLGTYGLKMMDAFLDLKEQAEDCGMCPADTPERQQRFEQMNGAAHAPGSRQPSE
Ga0209659_113890713300025658MarineMEKNIWEQLEEHIQDNLGTYGLVMQDQFLHLKEDAEDLGMCPADTEERQTELENR
Ga0208162_101730323300025674AqueousLTQISYYTIMDEENNIWEQMETHMHENLGTYGLEMMNIFLHLKEQAEDCGMCPEDTPERQERFEQMNGLAHAPGSRQPSE
Ga0209252_122145923300025719MarineMDQDNNIWEQLETHMHEYLGIYGQGLMDRFLDLKELAEDRGMCPGDTPERQQQFDNMHGEAHVPGSR
Ga0208899_116146313300025759AqueousMEDENIWEQLETHMHENLGTYGLKMMDAFLNLKEQAEDRGMCPPDTPERQEQFEHMHG
Ga0208543_111796933300025810AqueousMDQHNNIWEQLETHMHDNLGTYGLKMMDAFLDLKEQAEDCGMCPPDTPE
Ga0209223_1007363773300025876Pelagic MarineEQLEEHIHDNLGTYGLNMMDRFLDIKEIAEDLGMCPDDTEERQTELENR
Ga0208880_103106733300026085MarineMDQDNNIWEQLETHMHENLGIYGLGMMDRFLDLKEQAEDCGMCPPDSEERQQRFEQMHGEAHAPGSR
Ga0247571_101350833300026495SeawaterMNDENIWEQLETHMHQNLGIYGLKMMDKFLELKEQAEDCNMCPPDTPERQD
Ga0208922_106881013300027197EstuarineSSKISYNIIMEDENIWEQLETHMHDNLGIYGLKMMDAFLTLKEQAEDCGMCPEDTAERQTQLEQR
Ga0207994_106933913300027416EstuarineNIIMEDENIWEQLETHMHDNLGIYGLKMMDAFLTLKEQAEDCGMCPEDTTERQTQLEQR
Ga0209090_1008942963300027813MarineMEKNIWEQLEEHINDNLGTYGLNMMDRFLDVKEIAEDLGLCPDDTEERQTELENR
Ga0228645_1000001463300028128SeawaterMNDENIWEQLETHMHQNLGIYGLKMMDKFLELKEQAEDCNMCPPDTPERQDQLENLQY
Ga0257110_134775213300028197MarineMENNLWEQLEEHINDNLGTYGLELMDRFLHLKEHAEDMGMCPEDTEERQAKLEEMHG
Ga0257121_103775873300028198MarineMNNENIWEQLETHMHENLGIYGLEMMDAFLELKEQAEDRAMCPADTPERHERDEELYG
Ga0307488_1018954153300031519Sackhole BrineMEKNIWEQLEEHINDNLGTYGLNMMDRFLDIKEIAEDLGLCPDDTEERQTELENR
Ga0315322_1006157163300031766SeawaterMISKFQVALHKRIDDNTIMDQDNNIWEQLETHMHDNLGTYGLKMMDAFLTLKEQAEDCGMCPPDTAERQTQFEQQHG
Ga0315320_1004876343300031851SeawaterMDETNNIWEQLETHMHDNLGTYGLKMMDAFLELKEQAEDCGMCPADTPERQEQFEQMHG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.