Scaffold Ga0211577

Basic Information
Taxon OID	3300020469 Open in IMG/M
Scaffold ID	Ga0211577_10000054 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020469 Open in IMG/M

Scaffold ID

Ga0211577_10000054 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	104956
Total Scaffold Genes	203 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (32.02%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

104956

Total Scaffold Genes

203 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (32.02%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4068	Long. (^o)	-127.7432	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4068

Long. (^o)

-127.7432

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F032304	Metagenome / Metatranscriptome	180	Y
F039679	Metagenome	163	Y
F044418	Metagenome / Metatranscriptome	154	N
F059455	Metagenome	134	Y
F064621	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_10000054101	F059455	GAGG	MNKGLYTEIVWSKGRTKEEMVKQTSWSSSKDYSGLSGLKFHCYSFNNDVQITAITSQGVSHNKYLQIPVDKIEEVCKTLMRSKKLMESN
Ga0211577_10000054156	F044418	N/A	MEFEQRMIDYAQKWYEVNDLETEKKNGNDLYLRVNDNVFTEVSHCDIRQKAMLWLESELEGVNNY
Ga0211577_10000054165	F032304	N/A	MKHSESGNRKVLKQIKKCPDIEEIRATANGYMIMAKNGEQYLAHMSAKAFHPLRRWLKNNTRLKALKF
Ga0211577_10000054177	F064621	N/A	MRFICYLIGMLDKKIEKFIQDNGLVRIQASPMAVAYDLWEDVGGHVWTYDMIVEAVK
Ga0211577_1000005487	F016956	AGGAG	MIDIIKTWQAPDKIALEIIDLALTHIKKVELNPEVETEGDNFDYWNSYDLGDGNYIDYNIHCGDEWCELKQDSSGEYEYTDPSTWSWDVACYAVNPPTEDNPYHQIDTDREQYLFSYNKKGNREVEFENE
Ga0211577_1000005489	F007770	N/A	MSGEGLSVSFRRTKATTKSNQELLREFQKIIYASRVTTHMKWYGEAHSVDILEHGDDNRPKFQQEYVAIKDTFQFEISVYDSWYQDADLYESHEREDSFVSFARKFAEDNNLMYFPDGFPAEWIEQEIIDGKKNWNHYNVKPDDKNIDKICEVWYKYGMKKLQNDSDSLWYNTRDEIKELMEKKEHEYSS
Ga0211577_1000005493	F039679	GGA	MSAKNSHLTIREDLLEEDPNISVPIRFLDHQEDAWIGDSDTLYIDEVYSPENGEQLDDMWGYNMIIKITDPNQKDQYGNVWKDRLAFAISADFDWN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211577_10000054

Overview

Ecosystem & Geography

Associated Families

Sequences