Metagenome Family F064621

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064621
Family Type	Metagenome
Number of Sequences	128
Average Sequence Length	48 residues
Representative Sequence	MLDKKIQQFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFEMIEQAVK
Number of Associated Samples	102
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	11.72 %
% of genes near scaffold ends (potentially truncated)	17.19 %
% of genes from short scaffolds (< 2000 bps)	56.25 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.719 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (18.750 % of family members)
Environment Ontology (ENVO)	Unclassified (74.219 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (90.625 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.32% β-sheet: 13.16% Coil/Unstructured: 60.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF02562	PhoH	4.69
PF06067	DUF932	3.12
PF00082	Peptidase_S8	2.34
PF03796	DnaB_C	1.56
PF00011	HSP20	1.56
PF04542	Sigma70_r2	1.56
PF13589	HATPase_c_3	0.78
PF04488	Gly_transf_sug	0.78
PF13671	AAA_33	0.78
PF01755	Glyco_transf_25	0.78
PF10263	SprT-like	0.78
PF04851	ResIII	0.78
PF03851	UvdE	0.78
PF03237	Terminase_6N	0.78
PF00777	Glyco_transf_29	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	Signal transduction mechanisms [T]	4.69
COG1875	Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains	General function prediction only [R]	4.69
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.56
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	1.56
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.56
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	1.56
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.56
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.56
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.56
COG3306	Glycosyltransferase involved in LPS biosynthesis, GR25 family	Cell wall/membrane/envelope biogenesis [M]	0.78
COG3774	Mannosyltransferase OCH1 or related enzyme	Cell wall/membrane/envelope biogenesis [M]	0.78
COG4294	UV DNA damage repair endonuclease	Replication, recombination and repair [L]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
All Organisms	root	All Organisms	38.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
cellular organisms	root	All Organisms → cellular organisms	36.72 %
Viruses	superkingdom	All Organisms → Viruses	1.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.94 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.72 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	7.81 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.56 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10.94 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	7.81 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.56 %
Candidatus Pacearchaeota	clade	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota	0.78 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	10.94 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	7.81 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.56 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	0.78 %
Bacteriovoracales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
Porticoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	10.94 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.56 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.78 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.78 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.78 %
Halobacteriovoraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae	0.78 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
unclassified Porticoccaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae	10.94 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.56 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.78 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.78 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.78 %
Halobacteriovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → Halobacteriovorax	0.78 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	10.94 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.56 %
unclassified Halobacteriovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → Halobacteriovorax → unclassified Halobacteriovorax	0.78 %
Crocinitomicaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae	0.78 %
Flammeovirgaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae	0.78 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.78 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	10.94 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.56 %
unclassified Crocinitomicaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae	0.78 %
Halobacteriovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → Halobacteriovorax → unclassified Halobacteriovorax → Halobacteriovorax sp.	0.78 %
unclassified Flammeovirgaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae	0.78 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.78 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.72 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	10.94 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.56 %
Crocinitomicaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	0.78 %
Flammeovirgaceae bacterium TMED32	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium TMED32	0.78 %
Halobacteriovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → Halobacteriovorax → unclassified Halobacteriovorax → Halobacteriovorax sp.	0.78 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.78 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10000549	All Organisms → cellular organisms → Bacteria	32569	Open in IMG/M
3300000117\|DelMOWin2010_c10016753	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	3936	Open in IMG/M
3300000226\|SI34jun09_135mDRAFT_1031309	Not Available	1349	Open in IMG/M
3300001347\|JGI20156J14371_10002540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	14249	Open in IMG/M
3300001349\|JGI20160J14292_10068387	Not Available	1448	Open in IMG/M
3300001352\|JGI20157J14317_10033403	Not Available	2648	Open in IMG/M
3300001952\|GOS2224_1007027	Not Available	1476	Open in IMG/M
3300003264\|JGI26119J46589_1016256	Not Available	879	Open in IMG/M
3300003474\|NAP4_1011121	Not Available	1567	Open in IMG/M
3300004097\|Ga0055584_100204393	Not Available	2006	Open in IMG/M
3300004097\|Ga0055584_101881091	Not Available	615	Open in IMG/M
3300004448\|Ga0065861_1008542	Not Available	33375	Open in IMG/M
3300004457\|Ga0066224_1075568	Not Available	1159	Open in IMG/M
3300004457\|Ga0066224_1224327	Not Available	1571	Open in IMG/M
3300004460\|Ga0066222_1114855	Not Available	654	Open in IMG/M
3300004461\|Ga0066223_1033552	Not Available	3417	Open in IMG/M
3300005522\|Ga0066861_10007931	Not Available	3849	Open in IMG/M
3300005606\|Ga0066835_10050890	Not Available	1237	Open in IMG/M
3300005608\|Ga0066840_10027575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1114	Open in IMG/M
3300005934\|Ga0066377_10001939	All Organisms → cellular organisms → Bacteria	4865	Open in IMG/M
3300005941\|Ga0070743_10060248	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1291	Open in IMG/M
3300005971\|Ga0066370_10001309	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5812	Open in IMG/M
3300006749\|Ga0098042_1148894	Not Available	574	Open in IMG/M
3300006752\|Ga0098048_1001527	Not Available	10098	Open in IMG/M
3300006752\|Ga0098048_1010127	All Organisms → cellular organisms → Bacteria	3361	Open in IMG/M
3300006752\|Ga0098048_1033715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1659	Open in IMG/M
3300006789\|Ga0098054_1280857	Not Available	597	Open in IMG/M
3300006793\|Ga0098055_1004989	Not Available	6432	Open in IMG/M
3300006929\|Ga0098036_1004125	Not Available	4995	Open in IMG/M
3300007554\|Ga0102820_1143502	Not Available	575	Open in IMG/M
3300007715\|Ga0102827_1073647	Not Available	768	Open in IMG/M
3300007715\|Ga0102827_1107130	Not Available	633	Open in IMG/M
3300009003\|Ga0102813_1120152	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300009071\|Ga0115566_10016848	Not Available	5415	Open in IMG/M
3300009434\|Ga0115562_1017154	Not Available	3857	Open in IMG/M
3300009434\|Ga0115562_1245159	Not Available	626	Open in IMG/M
3300009438\|Ga0115559_1049435	Not Available	1818	Open in IMG/M
3300009438\|Ga0115559_1146785	Not Available	880	Open in IMG/M
3300009438\|Ga0115559_1363265	Not Available	503	Open in IMG/M
3300010149\|Ga0098049_1015729	Not Available	2525	Open in IMG/M
3300010153\|Ga0098059_1101297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1144	Open in IMG/M
3300011253\|Ga0151671_1144445	Not Available	1080	Open in IMG/M
3300012919\|Ga0160422_10754238	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	623	Open in IMG/M
3300012920\|Ga0160423_10000118	All Organisms → cellular organisms → Bacteria	56210	Open in IMG/M
3300012920\|Ga0160423_10000139	All Organisms → cellular organisms → Bacteria	52691	Open in IMG/M
3300012920\|Ga0160423_11172612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	513	Open in IMG/M
3300012928\|Ga0163110_10034900	Not Available	3077	Open in IMG/M
3300012936\|Ga0163109_10059867	Not Available	2793	Open in IMG/M
3300017727\|Ga0181401_1096153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	757	Open in IMG/M
3300017746\|Ga0181389_1185080	Not Available	542	Open in IMG/M
3300017759\|Ga0181414_1168999	Not Available	570	Open in IMG/M
3300017763\|Ga0181410_1017631	Not Available	2385	Open in IMG/M
3300017776\|Ga0181394_1168842	Not Available	674	Open in IMG/M
3300017824\|Ga0181552_10013876	All Organisms → cellular organisms → Bacteria	5194	Open in IMG/M
3300018421\|Ga0181592_10136954	Not Available	1877	Open in IMG/M
3300018423\|Ga0181593_10457804	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	941	Open in IMG/M
3300019751\|Ga0194029_1007053	Not Available	1542	Open in IMG/M
3300019765\|Ga0194024_1149549	Not Available	548	Open in IMG/M
3300020166\|Ga0206128_1156144	Not Available	915	Open in IMG/M
3300020169\|Ga0206127_1075107	Not Available	1545	Open in IMG/M
3300020182\|Ga0206129_10020328	All Organisms → cellular organisms → Bacteria	5202	Open in IMG/M
3300020182\|Ga0206129_10325204	Not Available	608	Open in IMG/M
3300020185\|Ga0206131_10000275	Not Available	74298	Open in IMG/M
3300020185\|Ga0206131_10003303	Not Available	18720	Open in IMG/M
3300020264\|Ga0211526_1017726	Not Available	1172	Open in IMG/M
3300020281\|Ga0211483_10015515	Not Available	2551	Open in IMG/M
3300020313\|Ga0211485_1032609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	938	Open in IMG/M
3300020314\|Ga0211522_1019214	Not Available	1322	Open in IMG/M
3300020323\|Ga0211673_1002731	All Organisms → cellular organisms → Bacteria	4844	Open in IMG/M
3300020374\|Ga0211477_10003307	All Organisms → cellular organisms → Bacteria	9077	Open in IMG/M
3300020378\|Ga0211527_10045917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1380	Open in IMG/M
3300020379\|Ga0211652_10062486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1118	Open in IMG/M
3300020403\|Ga0211532_10237671	Not Available	716	Open in IMG/M
3300020405\|Ga0211496_10124732	Not Available	944	Open in IMG/M
3300020410\|Ga0211699_10069067	Not Available	1306	Open in IMG/M
3300020421\|Ga0211653_10027646	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium TMED32	2648	Open in IMG/M
3300020424\|Ga0211620_10016311	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	3264	Open in IMG/M
3300020438\|Ga0211576_10524675	Not Available	596	Open in IMG/M
3300020442\|Ga0211559_10000004	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	128598	Open in IMG/M
3300020442\|Ga0211559_10000585	Not Available	22792	Open in IMG/M
3300020442\|Ga0211559_10087329	Not Available	1508	Open in IMG/M
3300020442\|Ga0211559_10482541	Not Available	568	Open in IMG/M
3300020469\|Ga0211577_10000054	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	104956	Open in IMG/M
3300020469\|Ga0211577_10143768	Not Available	1613	Open in IMG/M
3300020471\|Ga0211614_10035578	Not Available	2076	Open in IMG/M
3300021356\|Ga0213858_10022744	Not Available	2999	Open in IMG/M
3300021371\|Ga0213863_10011513	All Organisms → cellular organisms → Bacteria	5435	Open in IMG/M
3300021958\|Ga0222718_10396277	Not Available	691	Open in IMG/M
3300021958\|Ga0222718_10410715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	674	Open in IMG/M
3300021959\|Ga0222716_10034369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	3672	Open in IMG/M
3300021964\|Ga0222719_10004833	Not Available	11756	Open in IMG/M
3300021964\|Ga0222719_10025194	Not Available	4718	Open in IMG/M
3300022074\|Ga0224906_1043307	Not Available	1475	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10001590	All Organisms → cellular organisms → Bacteria	21849	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10003874	All Organisms → cellular organisms → Bacteria	13409	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10193295	Not Available	1021	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10282414	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	777	Open in IMG/M
3300023170\|Ga0255761_10474094	Not Available	599	Open in IMG/M
(restricted) 3300023210\|Ga0233412_10168425	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	943	Open in IMG/M
(restricted) 3300024255\|Ga0233438_10014191	All Organisms → cellular organisms → Bacteria	5291	Open in IMG/M
(restricted) 3300024264\|Ga0233444_10005677	All Organisms → cellular organisms → Bacteria	11425	Open in IMG/M
3300024346\|Ga0244775_10007933	All Organisms → cellular organisms → Bacteria	10326	Open in IMG/M
3300024346\|Ga0244775_10392983	Not Available	1141	Open in IMG/M
3300025070\|Ga0208667_1001508	Not Available	8425	Open in IMG/M
3300025070\|Ga0208667_1022835	Not Available	1195	Open in IMG/M
3300025098\|Ga0208434_1001185	Not Available	10879	Open in IMG/M
3300025098\|Ga0208434_1020338	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300025128\|Ga0208919_1003460	Not Available	7729	Open in IMG/M
3300025141\|Ga0209756_1125283	Not Available	1068	Open in IMG/M
3300025620\|Ga0209405_1019266	Not Available	2908	Open in IMG/M
3300025654\|Ga0209196_1090761	Not Available	924	Open in IMG/M
3300025727\|Ga0209047_1244105	Not Available	522	Open in IMG/M
3300025886\|Ga0209632_10002491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	17626	Open in IMG/M
3300025886\|Ga0209632_10269768	Not Available	862	Open in IMG/M
3300026083\|Ga0208878_1000664	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	11827	Open in IMG/M
3300026085\|Ga0208880_1011494	Not Available	1832	Open in IMG/M
3300026189\|Ga0208405_1024386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	944	Open in IMG/M
3300026266\|Ga0208410_1074206	Not Available	891	Open in IMG/M
3300027406\|Ga0208965_1088989	Not Available	623	Open in IMG/M
3300027501\|Ga0208948_1026224	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1305	Open in IMG/M
3300027702\|Ga0209036_1003633	All Organisms → cellular organisms → Bacteria	6232	Open in IMG/M
3300028194\|Ga0257106_1174406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → Halobacteriovorax → unclassified Halobacteriovorax → Halobacteriovorax sp.	747	Open in IMG/M
3300028198\|Ga0257121_1039135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	2051	Open in IMG/M
3300029318\|Ga0185543_1000016	All Organisms → cellular organisms → Bacteria	44830	Open in IMG/M
3300029319\|Ga0183748_1030878	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300031519\|Ga0307488_10029242	Not Available	4398	Open in IMG/M
3300031519\|Ga0307488_10843055	Not Available	503	Open in IMG/M
3300031757\|Ga0315328_10000142	All Organisms → cellular organisms → Bacteria	28665	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	98.44%
Freshwater	Environmental → Aquatic → Freshwater	1.56%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	25.00%
Oceanic	Environmental → Aquatic → Marine → Oceanic	24.22%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.72%
Pelagic	Environmental → Aquatic → Marine → Pelagic	10.94%
Coastal	Environmental → Aquatic → Marine → Coastal	7.81%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	7.81%
Inlet	Environmental → Aquatic → Marine → Inlet	6.25%
Strait	Environmental → Aquatic → Marine → Strait	4.69%
River	Environmental → Aquatic → Freshwater → River	1.56%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	25.00%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	19.53%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	10.94%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.81%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	7.81%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	5.47%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	4.69%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.69%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.12%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	3.12%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.56%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	18.75%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	18.75%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	6.25%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	5.47%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	5.47%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	4.69%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	4.69%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.69%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	3.91%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	3.91%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.91%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.12%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.12%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.34%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.56%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.56%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.56%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.56%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.78%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.78%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.78%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.78%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.78%
Estuarine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000226	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 135m	Environmental	Open in IMG/M
3300001347	Pelagic Microbial community sample from North Sea - COGITO 998_met_06	Environmental	Open in IMG/M
3300001349	Pelagic Microbial community sample from North Sea - COGITO 998_met_10	Environmental	Open in IMG/M
3300001352	Pelagic Microbial community sample from North Sea - COGITO 998_met_07	Environmental	Open in IMG/M
3300001952	Marine microbial communities from Newport Harbor, Rhode Island, USA - GS008	Environmental	Open in IMG/M
3300003264	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10	Environmental	Open in IMG/M
3300003474	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental	Open in IMG/M
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300005522	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257	Environmental	Open in IMG/M
3300005606	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84	Environmental	Open in IMG/M
3300005608	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A	Environmental	Open in IMG/M
3300005934	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B	Environmental	Open in IMG/M
3300005941	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697	Environmental	Open in IMG/M
3300005971	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A	Environmental	Open in IMG/M
3300006749	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300007554	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709	Environmental	Open in IMG/M
3300007715	Estuarine microbial communities from the Columbia River estuary - metaG S.751	Environmental	Open in IMG/M
3300009003	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009434	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516	Environmental	Open in IMG/M
3300009438	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300011253	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental	Open in IMG/M
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018423	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019751	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020166	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1	Environmental	Open in IMG/M
3300020169	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1	Environmental	Open in IMG/M
3300020182	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2	Environmental	Open in IMG/M
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental	Open in IMG/M
3300020264	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)	Environmental	Open in IMG/M
3300020281	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)	Environmental	Open in IMG/M
3300020313	Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX556055-ERR599061)	Environmental	Open in IMG/M
3300020314	Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556135-ERR598974)	Environmental	Open in IMG/M
3300020323	Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX555979-ERR599120)	Environmental	Open in IMG/M
3300020374	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)	Environmental	Open in IMG/M
3300020378	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)	Environmental	Open in IMG/M
3300020379	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020405	Marine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)	Environmental	Open in IMG/M
3300020410	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)	Environmental	Open in IMG/M
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental	Open in IMG/M
3300020424	Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300020471	Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021371	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental	Open in IMG/M
3300023170	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG	Environmental	Open in IMG/M
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental	Open in IMG/M
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental	Open in IMG/M
3300024264 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025070	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025098	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025141	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)	Environmental	Open in IMG/M
3300025620	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)	Environmental	Open in IMG/M
3300025654	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 (SPAdes)	Environmental	Open in IMG/M
3300025727	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025886	Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)	Environmental	Open in IMG/M
3300026083	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)	Environmental	Open in IMG/M
3300026085	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300026189	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)	Environmental	Open in IMG/M
3300026266	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257 (SPAdes)	Environmental	Open in IMG/M
3300027406	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes)	Environmental	Open in IMG/M
3300027501	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes)	Environmental	Open in IMG/M
3300027702	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental	Open in IMG/M
3300028198	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100	Environmental	Open in IMG/M
3300029318	Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289	Environmental	Open in IMG/M
3300029319	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031757	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100005499	3300000101	Marine	MINKKIEKFIQDNDLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK*
DelMOWin2010_100167532	3300000117	Marine	MLDKKIEQFIQDNGLVRVQASPMSEAFDLWECPGGHVWTFEMIKQAVK*
SI34jun09_135mDRAFT_10313091	3300000226	Marine	MTEEIKQFIEDNGLVKIQLSPASEELDLWECVGGHIWNFDMI
JGI20156J14371_1000254025	3300001347	Pelagic Marine	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFDMIIDSVKK*
JGI20160J14292_100683872	3300001349	Pelagic Marine	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWEDAGGHVWTFDMIIDSAKK*
JGI20157J14317_100334038	3300001352	Pelagic Marine	KFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFEMIIDSAKK*
GOS2224_10070275	3300001952	Marine	VGTKNMEIKIKKFIQDNSLVRIQASPMSEAFDLWECPGGHVWTFDMIINSVKK*
JGI26119J46589_10162562	3300003264	Marine	MMTEEIKKFIQDNNLVRIQASPMTESFDLWECAGGHVWSFEMIKQAIK*
NAP4_10111212	3300003474	Estuarine	MEQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTFEMIEQAVK*
Ga0055584_1002043935	3300004097	Pelagic Marine	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWEDAGGHVWTFDMIIDLVKK*
Ga0055584_1018810911	3300004097	Pelagic Marine	MLDKKVEQFIQDNGLERIQASPMSEAFDLWEDVGGHVWTYDMILE
Ga0065861_100854228	3300004448	Marine	MTEEMKKFIQDNNLVRIQASPMTESFDLWECLGGHVWSFEMIEQAIK*
Ga0066224_10755683	3300004457	Marine	MIKKVEQFIQDNGLERIQASPMSEAFDLWEDVGGHVWTFDMILEAAK*
Ga0066224_12243275	3300004457	Marine	MEKFIQDNSLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK*
Ga0066222_11148553	3300004460	Marine	MIKKVEQFIQDNGLERIQASPMSEAFDLWEDVGGHVWTFDMILEAA
Ga0066223_10335521	3300004461	Marine	MKKFIQDNNLVRIQASPMTESFDLWECLGGHVWSFEMIEQAIK*
Ga0066861_100079315	3300005522	Marine	MLDKKIKQFIQDNGLERIQASPMSEAFDLWECPGGHVWTFEMIKQAVK*
Ga0066835_100508904	3300005606	Marine	MLDKKIKQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTFDMIKQAVK*
Ga0066840_100275753	3300005608	Marine	MLDKKIQQFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFEMIEQAVK*
Ga0066377_100019393	3300005934	Marine	MLDKKIQQFIQDNGLVRIQASPMSEAFDLWEDVGGHIWTLEMIEQAVK*
Ga0070743_100602483	3300005941	Estuarine	MITEEIKKFIEENDLVRVQASPMSEALDLWRCPGGHIWNLDMIKGAIK*
Ga0066370_1000130916	3300005971	Marine	MLDKKIEEFIQDNGLVRVQASPMSEAFDLWECPGGHIWTFDMIVEAVKNN*
Ga0098042_11488942	3300006749	Marine	MITNKIKQFIQDNGLERIQASPMSEAFDLWECPGGHVWTFEMIKQAVK*
Ga0098048_100152712	3300006752	Marine	MINKKMEKFIQDNGLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK*
Ga0098048_10101274	3300006752	Marine	MLDKKIEKFIQDNGLERIQASPMSEAFDRWECPGGHVWTLEMIEQAVK*
Ga0098048_10337153	3300006752	Marine	MLDKKIEQFIQDNGLVRVQASPMSEAFDLWECPGGHVWNLEMIKQAIK*
Ga0098054_12808571	3300006789	Marine	LVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK*
Ga0098055_100498911	3300006793	Marine	MEKFIQDNGLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK*
Ga0098036_10041252	3300006929	Marine	MTIKMKKFIQDNGLVRIQASPMAEAFDLWEDAGGHVWTWGMIVKAVENN*
Ga0102820_11435022	3300007554	Estuarine	MITNKMEQFIQDNSLVRIQASPMSEAFDLWECAGGHVWTFEMIEQASCKN*
Ga0102827_10736472	3300007715	Estuarine	MMTEEIKKFIQDNNLVRIQASPMTESFDLWECAGGHVWSFEMIKQA
Ga0102827_11071301	3300007715	Estuarine	MINKKIEKFIQDNDLVRVLASPMSETFDLWKCPGGHVWTFEMIEQAIK*
Ga0102813_11201523	3300009003	Estuarine	DLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK*
Ga0115566_100168488	3300009071	Pelagic Marine	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFDMIIDSAKK*
Ga0115562_10171541	3300009434	Pelagic Marine	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFEMIIDSAKK*
Ga0115562_12451592	3300009434	Pelagic Marine	MEIKIKKFIQDNGLVRIQASPMSEAFDLWEDAGGHVWTFDMIIDSVKK*
Ga0115559_10494351	3300009438	Pelagic Marine	NMLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFDMIIDSAKK*
Ga0115559_11467851	3300009438	Pelagic Marine	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWT
Ga0115559_13632652	3300009438	Pelagic Marine	NMLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFDMIIDSVKK*
Ga0098049_10157295	3300010149	Marine	MLDKKIEKFIQDNGLVRVQASPMSEAFDLWECPGGHVWNLEMIKQAIK*
Ga0098059_11012972	3300010153	Marine	MTKKVEKFIEDNGLVRVQASPMAEAFDLWEDAGGNIWTWDQILDSVENN*
Ga0151671_11444454	3300011253	Marine	MITEEIKKFIQDNNLVRIQASPITEFFDLWECTCGHVLRFEMIKQAIK*
Ga0160422_107542381	3300012919	Seawater	MLDKKIEEFIQDNGLVRVQASPMSEAFDLWECPGGHIWTFEMIVEAVKNN*
Ga0160423_10000118119	3300012920	Surface Seawater	MLNKKVKEFIQDNGLVRIQASPMSEAFDLWECPGGHVWTLEMIEQAVK*
Ga0160423_1000013927	3300012920	Surface Seawater	MLDKKIQKFIEENGLVRIQASPMSEAFDLWECPGGHVWTLEMIKGALK*
Ga0160423_111726122	3300012920	Surface Seawater	MITNKMEQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTFEMIEQAVK*
Ga0163110_100349004	3300012928	Surface Seawater	MIKKVEQFIQDNGLERIQASPMSEAFDLWEDVGGHVWTYDMILEAVK*
Ga0163109_100598679	3300012936	Surface Seawater	MLDKKIQKFIEENGLVRIQASPMSEAFDLWECPGGHVWTLEMIKGA*
Ga0181401_10961532	3300017727	Seawater	MMTEEIKKFIQDNNLVRIQASPMTESFDLWECAGGHVWSFEMIKQSAKQKTLTQTYV
Ga0181389_11850801	3300017746	Seawater	MLDKKIEQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTFDMIKQAVK
Ga0181414_11689991	3300017759	Seawater	MLNKKIQQFIQDNGLERIQASPMSEAFDLWECPGGHVWTFEMIKQAVK
Ga0181410_10176312	3300017763	Seawater	MDKKIEQFIQDHGLVRIQASPMSEAFDLWECPGGHVWTWDQIVESVNSLK
Ga0181394_11688421	3300017776	Seawater	MLDKKIEKFIQDNGLVRVQASPMSEAFDLWEDVGGHIWTLDMIEQAIK
Ga0181552_100138766	3300017824	Salt Marsh	MLDEKIKKFIQDNDLVRIQASPMSEASDLWEDAGRHVWNLEMIKQACNQK
Ga0181592_101369545	3300018421	Salt Marsh	MLDKKIEKFIKDNGLVRVQASPMSEAFDLWEDVGGHIWTLDMIEQAIK
Ga0181593_104578041	3300018423	Salt Marsh	MLDKKIEKFIQDNGLVRIQASPMSEAFDLWEDVGGHVWTLDMIEQAIK
Ga0194029_10070533	3300019751	Freshwater	MLIKKIEQFIQDNGLVRVQASPMSEAFDLWECPGGHVWTFEMIKQAVK
Ga0194024_11495492	3300019765	Freshwater	MPMLGYTYMTNKMKQFIQDNGLVRIQASPMSEAFDLWECDGGHVWTFDMIKQAIK
Ga0206128_11561442	3300020166	Seawater	MEIKIKKFIQDNGLVRIQASPMSEAFDLWEDAGGHVWTFDMIIDSVKK
Ga0206127_10751071	3300020169	Seawater	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFDMIIDSAKK
Ga0206129_1002032811	3300020182	Seawater	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFDMIIDSVKK
Ga0206129_103252042	3300020182	Seawater	IQDNGLVRIQASPMSEAFDLWECPGGHVWTFEMIIDSAKK
Ga0206131_1000027565	3300020185	Seawater	MINKKIEKFIQDNDLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK
Ga0206131_100033038	3300020185	Seawater	MTNKMKQFIQDNGLVRIQASPMSEAFDRWECVGGHVWTFDMIKEAVK
Ga0211526_10177263	3300020264	Marine	MLDKKIKQFIQDNGLVRIQASPMSEAFDLWQCPGGHVWTFDMIEQAVK
Ga0211483_100155157	3300020281	Marine	MDKKIKQFIQDNGLVRIQASPMSEAFDLWECPGGHVWTWEQIVESANLSK
Ga0211485_10326092	3300020313	Marine	MLDEKAKKFIQDNGLVRVQASPMSEAFDLWECPGGHIWTLDMIVKAVK
Ga0211522_10192142	3300020314	Marine	MLDKKIKQFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFDMIEQAVK
Ga0211673_10027316	3300020323	Marine	MLDKEIVQFIQDNDLVRIQVSPMSEAFDLWECPGGHLWTLEMIVEALK
Ga0211477_1000330724	3300020374	Marine	MLNKEVKQFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFDMIKESVK
Ga0211527_100459173	3300020378	Marine	MDHFVLAFLGFMCYLIGMLDKKIQKFIQDNGLVRVQASPMSEAFDLWECPGGHVWTLEMIEQAVK
Ga0211652_100624863	3300020379	Marine	MITNKMEQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTFEMIEQAVK
Ga0211532_102376712	3300020403	Marine	MCYLIGMLDKKIEEFIQDNGLVRVQASPMSEAFDLWEDVGGHVWTWDQIVEAVNSSK
Ga0211496_101247322	3300020405	Marine	MCYLIGMLDKKIEEFIQDNGLVRVQASPMSEAFDLWEDVGGHIWTFDMIVEAVK
Ga0211699_100690673	3300020410	Marine	MLDKKIEKFIQDNGLVRIQASPMAEAYDLWEDVGGHVWTYDMIVEAIALGILQK
Ga0211653_100276463	3300020421	Marine	MEQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTFEMIEQAVK
Ga0211620_100163114	3300020424	Marine	MLDKKIQEFIQDNGLVRVQASPMSEAFDLWECPGGHVWTFDMIVEAVKNS
Ga0211576_105246751	3300020438	Marine	MIDKKMEKFIQDNGLVRIQASPMAVAYDLWEDVGGHVWTYDMIKQAVK
Ga0211559_10000004144	3300020442	Marine	MLTKEIQKFIEENGLQRIQASPMSEAFDLWECPGGHVWTFEMIKQAVK
Ga0211559_1000058520	3300020442	Marine	MLDKKIQKFIQENGLVRIQASPMSEALDLWECPGGHVWNLEMIKQAIK
Ga0211559_100873293	3300020442	Marine	MLNDKVQKFIQDNDLVRIQASPMSEAFDLWECPGGHVWTLEMIEQAIK
Ga0211559_104825411	3300020442	Marine	MLDKEIQQFIQDNDLVRIQASPMSETSDLWECPGGHVWNWEMIKQAVKLKNFLCSSEK
Ga0211577_10000054177	3300020469	Marine	MRFICYLIGMLDKKIEKFIQDNGLVRIQASPMAVAYDLWEDVGGHVWTYDMIVEAVK
Ga0211577_101437683	3300020469	Marine	MLDKKIQNFIQDNGLERIQASPMSEAFDLWKCAGGHVWTLERIQEAVRKERVL
Ga0211614_100355781	3300020471	Marine	MLDKKVKQFIQDNSLVRVQASPMSEAFDLWECAGGHIWTWEMIVEAVENS
Ga0213858_100227446	3300021356	Seawater	MLDKEIQQFIQDNDLVRIQASPMSEAFDLWECPGGHVWTLEMIEQAVK
Ga0213863_100115132	3300021371	Seawater	MLDEKIKKFIQDNDLVRIQASPMSEASDLWEDAGGHVWNLEMIKQACNQK
Ga0222718_103962773	3300021958	Estuarine Water	MLGYTYMTNKMKQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTFDMIKQAVK
Ga0222718_104107152	3300021958	Estuarine Water	MCDIVSMLNKEVKQFIQDNGLVRIQASPMTETFDLWECAGGHVWTWDMIVEAVKNN
Ga0222716_100343692	3300021959	Estuarine Water	MCDIVSMLNKEVKQFIQDNGLVRIQASPMTETFDLWECAGGHVWTWDMIVEAVKNNXNKFDFYLKLV
Ga0222719_100048338	3300021964	Estuarine Water	MLMLGYTYMTNKMKQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTFDMIKQAVK
Ga0222719_100251947	3300021964	Estuarine Water	MLMLGYTYMTNKMKQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTLDMIKQAVK
Ga0224906_10433073	3300022074	Seawater	MLDKKIKQFIQDNGLVRIQASPMSEAFDLWECVGGHVWTFDMIKQAVK
(restricted) Ga0233432_1000159053	3300023109	Seawater	MIKKVEQFIQDNGLERIQASPMSEAFDLWEDVGGHVWTYDMILEAAK
(restricted) Ga0233432_1000387424	3300023109	Seawater	MITNKMEQFIQDNSLVRIQASPMSEAFDLWKCVGGHVWTFEMIKQAVK
(restricted) Ga0233432_101932953	3300023109	Seawater	MITNKMEQFIQDNSLVRIQASPMSEALDLWKCVGGHVWTFEMIKQAVK
(restricted) Ga0233432_102824143	3300023109	Seawater	KFIQDNNLVRIQASPMTESFDLWECLGGHVWSFEMIKQAVK
Ga0255761_104740941	3300023170	Salt Marsh	MTEKVQQFIQDNDLVRIQASPMSEASDLWECPGGHVWNWEMIKQAVELKN
(restricted) Ga0233412_101684253	3300023210	Seawater	MITEEIKKFIQDNDLVRIQASPMTESFDLWECPGGHVWSFEMIKQSAK
(restricted) Ga0233438_100141911	3300024255	Seawater	MITNKMEQFIQDNSLVRIQASPMSEAFDLWECAGGHVWTFEMIEQASCKN
(restricted) Ga0233444_1000567713	3300024264	Seawater	MTEKIKEFIQDNDLVRIQASPMSETFDLWECPGGHVWTFDMIKQAIS
Ga0244775_100079331	3300024346	Estuarine	MITEEIKKFIEENDLVRVQASPMSEALDLWRCPGGHIWNLDMIKGAIK
Ga0244775_103929832	3300024346	Estuarine	MMTEEIKKFIQDNNLVRIQASPMTESFDLWECAGGHVWSFEMIKQAIK
Ga0208667_100150812	3300025070	Marine	MINKKMEKFIQDNGLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK
Ga0208667_10228353	3300025070	Marine	MLDKKIEQFIQDNGLVRVQASPMSEAFDLWECPGGHVWNLEMIKQAIK
Ga0208434_10011859	3300025098	Marine	MEKFIQDNGLVRVLASPMSETFDLWECPGGHVWTFEMIEQAIK
Ga0208434_10203385	3300025098	Marine	MLDKKIEKFIQDNGLERIQASPMSEAFDRWECPGGHVWTLEMIEQAVK
Ga0208919_100346014	3300025128	Marine	MTIKMKKFIQDNGLVRIQASPMAEAFDLWEDAGGHVWTWGMIVKAVENN
Ga0209756_11252831	3300025141	Marine	MLNKEVKQFIQDNGLVRIQASPMSEAFDLWECVGG
Ga0209405_10192662	3300025620	Pelagic Marine	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFEMIIDSAKK
Ga0209196_10907611	3300025654	Pelagic Marine	NMLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFDMIIDSVKK
Ga0209047_12441053	3300025727	Marine	VSMLNKEVNQFIQDNGLERIQASPMSEAFDLWECPGGHVWTFEMIKQAVK
Ga0209632_1000249123	3300025886	Pelagic Marine	MLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTF
Ga0209632_102697681	3300025886	Pelagic Marine	NMLDNKIQKFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFEMIIDSAKK
Ga0208878_100066425	3300026083	Marine	MLDKKIEEFIQDNGLVRVQASPMSEAFDLWECPGGHIWTFDMIVEAVKNN
Ga0208880_10114943	3300026085	Marine	MLDKKIQQFIQDNGLVRIQASPMSEAFDLWEDVGGHIWTLEMIEQAVK
Ga0208405_10243863	3300026189	Marine	MLDKKIQQFIQDNGLVRIQASPMSEAFDLWECPGGHVWTFEMIEQAVK
Ga0208410_10742062	3300026266	Marine	MLDKKIKQFIQDNGLERIQASPMSEAFDLWECPGGHVWTFEMIKQAVK
Ga0208965_10889891	3300027406	Marine	MMTEEIKKFIQDNNLVRIQASPMTESFNLWECAGGHVWSFEMIKQSAK
Ga0208948_10262241	3300027501	Marine	MMTEEIKKFIQDNNLVRIQASPMTESFDLWECAGGHVWSFEMIKQSAK
Ga0209036_100363311	3300027702	Marine	MLNDKIKKFIQDNDLVRIQASPMSEAFDLWEDVGGHVWTLEMIELAVS
Ga0257106_11744061	3300028194	Marine	MMTEEIKKFIQDNNLVRIQASPMTESFDLWECLGGHVWSFEMIKQAVK
Ga0257121_10391355	3300028198	Marine	QFIQDNGLERIQASPMSEAFDLWECPGGHVWTFEMIKQAVK
Ga0185543_100001621	3300029318	Marine	MLDKEIQQFIQDNDLVRIQASPMSETSDLWECPGGHVWNWEMIKQAVELKNFLCSLEK
Ga0183748_10308784	3300029319	Marine	MCYLIGMLDKKIEKFIQDNGLVRVQASPMSEAFDLWEDVGGHIWTFEMIVEAVK
Ga0307488_100292424	3300031519	Sackhole Brine	MEKKVEQFIQDNGLERIQASPMSEAFDLWEDVGGHVWTYDMILEAAK
Ga0307488_108430551	3300031519	Sackhole Brine	VEQFIQDNGLERIQASPMSEAFDLWEDVGGHVWTYDMILEAVK
Ga0315328_1000014220	3300031757	Seawater	MTEKIQKFIQDNGLVRVQASPMAEAFDLWECAGGHIWSWEMIVEAVERS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters