Scaffold Ga0211576_10161790

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10161790
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1207
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005743	Metagenome / Metatranscriptome	391	Y
F018266	Metagenome / Metatranscriptome	236	N
F080091	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_101617902	F018266	GAGG	MFRVILENKFRENPINLSRAVKLLYNQDFTGSIRLENILWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKLSIRVVTIPSGSDKRELLVLNKIYGGNNG
Ga0211576_101617903	F080091	GAGG	MSLKLWKFLSVRIKVEDHNGKIHWYDETDCNKHDIGIEWDIEDIINKQGGTFDEEEVGKKQDT
Ga0211576_101617904	F005743	AGGAGG	MKRNLIVYKVDYVNRHEDYNTQTGRFVRTKRIVMTPDEVNQTDGYWRNHRNVEKKFAKQMMGREDAYWDSKYRVMRVRKA