NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10471904

Scaffold Ga0211729_10471904


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10471904 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3164
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002357Metagenome / Metatranscriptome567Y
F007469Metagenome / Metatranscriptome350Y
F020681Metagenome / Metatranscriptome222Y
F032636Metagenome179Y
F037698Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_104719041F032636N/AQSIMTDHSDTIKGIMGRETDYIERTIDTHIDEFEDIGIL
Ga0211729_104719045F002357GGAGGMAFNLEDYEDVATLNKWLISNYPMFRSDLSVISHDPEKGYILVQATLWRDSKDSAPAVSNVAFGSRETYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVESNPSFKEKLESRQNMYGKAGSKSAQIETILRDSFAADKPADPVAWSVGEVVDQIAASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKACEPKWAKLTANGKWYFEGGE
Ga0211729_104719046F007469GGAGGMGELQIIDGSGLTATFTDDGVKVEPSIVICDLCNDDRLLHEGDLLRCYNCHAINRIPYHA
Ga0211729_104719048F020681AGGMVKFRCNFCSANSEFVWLDGYDTHEGFRVYQCLKCCGVGVKNDAESTDTQEPVMRCPKCGAWMFADKECYTCAILMIKELTK
Ga0211729_104719049F037698AGGAGMCDSHDKRTHEIDWVYQNKLHEQWLLDNPDAQYIGWMSI
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Institute for Fundamental Biomedical Research
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