Scaffold Ga0206125_10003573

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10003573
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14699
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (80.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y
F025414	Metagenome	202	Y
F034211	Metagenome	175	N
F037480	Metagenome	168	Y
F052942	Metagenome	142	Y
F053549	Metagenome	141	Y
F064211	Metagenome	129	Y
F074152	Metagenome	120	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000357314	F064211	AGGAG	MMKAGQVKAWLDQGPAVLLQECDIEGEAIAIDEVDDVVATTERGWVIHLLQTGEMLTVHEETLHNGEMDV
Ga0206125_1000357321	F074152	AGGA	MKLLTTFVLIGTVDSKDDFFATVEINMNPATEQVGHAIMPLGAFPCQVKEGDNFYILKLTKDSLPVIICEETKETKSKNVGE
Ga0206125_1000357335	F053549	GGAG	MKVGDLVRWENVLNDSMDHHRVDHGLVIKMSRTGHDSESAQVLFTDGEMWWFDTEKLEVVNES
Ga0206125_1000357337	F018267	AGG	MKVGDLITFKPKSFGDEDWSNPGIVLDSYVSDDRQAGGWRDEIWVVWIDGHKYMVNERNDDVVYLTSSLQKDP
Ga0206125_1000357341	F037480	GGAGG	MQVGDLVIMPDSIEPITGIILRMKSDGEKHGLGRVEVYWVEDGEASWEPKKWLEVISNV
Ga0206125_1000357344	F106118	AGGAG	MQVGDLVRCTTVDGKPVGLVVERFSPAHSRLDSPRARPDIFYVLISGYEEPFPIRTRQMELVNASR
Ga0206125_1000357346	F025414	AGGTGG	MQVGSLVRETMDGNIGVILAWESDGWLVNFPKHGMVFHMLPKLLEVVDGAG
Ga0206125_1000357349	F034211	AGGAGG	MAYLKTDDLVIIPNRNGSNIQARVVDMQFRRFRRTWKDKATGENKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRDEYAAEFGGHWIDKMIEDSRAKRESAK
Ga0206125_1000357350	F052942	GGAG	MKVWVMQGSYEGEMFSSVHLTEKGCALACIFDITEFLGVEDEETALQVMNSCYPYTETDGEQTEAFEW