Scaffold Ga0211732_1567859

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1567859
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18827
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (64.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009530	Metagenome / Metatranscriptome	316	Y
F009885	Metagenome / Metatranscriptome	311	Y
F029107	Metagenome / Metatranscriptome	189	Y
F081245	Metagenome / Metatranscriptome	114	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_156785922	F009885	N/A	MTTTDWAQFILTLLSIGAIVVGSIRWYIQAQIKPIHEAVCDIRSETKTNGGTSMRDEIKAIKSEQEEAKQLRKATSDKLDHMYDVLLEYVSRAK
Ga0211732_156785924	F029107	N/A	MAQHSLITLSSSSATRLTPNGLHSGMDITIQNTHASAYVYLGAIGVTSSNYGYRLAPGSAWSIELPSQDSIYAITDTNGSKVATLQTGLES
Ga0211732_156785929	F009530	AGGAG	MTITYAIWQGSRLLSIDNIATDIKEIDTLINTLNDSDLGKKIKFCANVMEIKVTK
Ga0211732_156785933	F081245	AGGA	MINFVKELEVNNYLADEQVDPLAKMLDELIMKGEYK
Ga0211732_156785935	F087194	N/A	MTLDEYKQLVEAQRLTSLAIALDALRKSSAMQKEMEK