Scaffold Ga0211732_1371119

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1371119
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9683
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (77.42%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F004051	Metagenome / Metatranscriptome	455	Y
F004431	Metagenome / Metatranscriptome	438	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F013527	Metagenome / Metatranscriptome	270	Y
F020168	Metagenome / Metatranscriptome	225	Y
F050376	Metagenome / Metatranscriptome	145	Y
F085262	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_137111911	F007263	GGCGG	MIAKDYLDETDFYLIKDEQHFCCDESQFVHVCKAHGEQMGCYYCAFDYTQDCEEQH
Ga0211732_137111914	F001562	N/A	MEKTQFEKDLEIKESFIDLLNDVYPEVKIGYSTFTAAEILECCDPIAFSIGLIEHEDYLAEMENE
Ga0211732_137111916	F000447	AGGAGG	MGYVEIFRMDNEGASWVDLSEATPNELLDLEIGLFQEGAI
Ga0211732_137111917	F050376	AGG	MTLEEYKAHVEAQRKASLLKAIATMSEANATIGSLFNTKEAN
Ga0211732_13711192	F004051	GAGG	MTIDNQVYKVGDLFTTLKSHKTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAQTLGV
Ga0211732_137111921	F004431	AGAAG	MTITYSLWDGAQLLGAGFTATSADEMNKVVTDLQKVSKNVVAHMRKVEQN
Ga0211732_13711193	F085262	AGGAG	MSNLYSILSERHPEGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL
Ga0211732_13711196	F020168	N/A	MTDLFGSVIAIILIGFLCSPIVLAVYMWNTAKIDNDNDGKDDLPYRWNK
Ga0211732_13711198	F013527	AGG	MEHYEFNTFIVVEAESYDEAIDVFQFQLKYGINKDNVYVADIKQLTNNESVEV
Ga0211732_13711199	F004840	AGGAG	MYKITCAYDDNAPHWSAEYEKEFGAWENFFLFTDWGFADEYSTVNLHTPTGKCYTRIFYREGRKVLTI