Scaffold Ga0211732_1246415

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1246415
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3514
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F013526	Metagenome / Metatranscriptome	270	Y
F087194	Metagenome / Metatranscriptome	110	Y
F099300	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_124641510	F013526	AGGAG	MKKNVLISFVTEADTDLQAVFNLNKVFAKLSENELEKFNAFEVLPVE
Ga0211732_124641514	F087194	AGG	MNLDEYKQMVEAQRLASLGIALEALMKSKAIQEKMKEENK
Ga0211732_12464153	F000808	AGGAG	MNEYLYSVTTSYDGSLVNTLRVSDLLEAVNTWNKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGNVSVK
Ga0211732_12464154	F099300	AGG	MGVMKELHLDITTCDLCYGTGWLHFGNEIDFDTESCDCNPHQLFITKENN