Scaffold Ga0211732_1136853

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1136853
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15029
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (57.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024789	Metagenome / Metatranscriptome	204	Y
F034575	Metagenome / Metatranscriptome	174	N
F035304	Metagenome / Metatranscriptome	172	Y
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_113685311	F066789	GGA	MTCTKYGCDYQLDLDGQVTCAVCGAMDDDKQPVDIFETQTDFE
Ga0211732_113685316	F024789	N/A	MKEPKITKMDWRALGYWPVWKDGKKVWVPKDEQLNNNSED
Ga0211732_11368533	F035304	N/A	MDLNTFREYIRLHAISLEQDLDNEDGADSIVPYLEGAIDVSKHYLEVLNESN
Ga0211732_11368534	F034575	GGAGG	MNPIDIDPYLRKQVELGMDGADIIHGHLKTLMVEAEGILDRCIEVEEESGEAMDSMARTEATGYLDALAEVYALTYAIAFAKEDFKNRKEILGG