Scaffold Ga0211732_1049056

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1049056
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2144
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007363	Metagenome / Metatranscriptome	352	Y
F045755	Metagenome / Metatranscriptome	152	N
F101047	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_10490561	F004840	GGA	MYRLTCAYDGNSHHWSAEYETEFGAWENFFRFTDWGMANEYSTVNLSTPTGKMYTKLFYRSGEVVVK
Ga0211732_10490562	F045755	AGGAG	MSEIAGMWICDNCDTLAVVSVLTDTIAIQQCKCVSNERETNV
Ga0211732_10490563	F101047	GGA	MGRMKEIYTQILECETCNGQGWQFFGNQTDYDVEACECNPLGFFQENK
Ga0211732_10490564	F000447	GGA	MGYIEIFRLNDEGAGWVDLSEATPDELFTLEVGLLNEGVFNTPEAD
Ga0211732_10490566	F007363	AGGAG	MRGYSIVNLLVDQYYKPTSLRRRFNGGIINFAEKREDVYPPEGYEAFAIRYRPTGSLRDEWATVAVRISDY