Scaffold Ga0207193_1016430

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1016430
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9703
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001280	Metagenome / Metatranscriptome	732	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003422	Metagenome / Metatranscriptome	487	Y
F006846	Metagenome / Metatranscriptome	363	Y
F013414	Metagenome / Metatranscriptome	271	Y
F014017	Metagenome / Metatranscriptome	266	Y
F026561	Metagenome / Metatranscriptome	197	Y
F033433	Metagenome / Metatranscriptome	177	Y
F050154	Metagenome / Metatranscriptome	145	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_101643015	F013414	AGGCGG	MKAQEIKVAEQLVNLTDDHWFNPAILARYLTDQPFYTVDRIMELVTQIIRWQSNRHNDELNTQDGIYNSGQTSEGLFLANELNETLNRLIKEYKWENIKLPVDPDKVIKRLPKAEEQSYRYSWLHEKDNRQMVTIDHPFI
Ga0207193_101643016	F000852	AGGA	MQTKREYLKQQGITVGVRGRFSGAAKVAIQEALSKGVTFSDPQPATKKAK
Ga0207193_101643018	F033433	N/A	LRLEHEMNKPSLEILEVNYSCSPGGIDEFEVYSLDERDLHNPPIYSSTELEKAVRFCYELGKDFTVRTVAEWEERELAYEASR
Ga0207193_101643019	F000263	AGGAG	MNAEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLMAEQDLASAIEQEELSEEAMDSMVRTECEGRLDTLVELYQLTYQLSFAIGARDE
Ga0207193_10164302	F014017	AGG	MDNLIEYLDENHRKKIADEIRYLELPPEWRPNEVIRYIVRIIEKNNG
Ga0207193_101643021	F050154	GGAG	MKLHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNNSNERVYG
Ga0207193_101643022	F001460	GAGG	MLGYTESDLNRMINAVHDAKLFYLRTPSDLMDKTELRNDLEMAVSFMQGLWAEGYFDHTD
Ga0207193_101643023	F002387	GAGG	MASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKEGDEGYIC
Ga0207193_101643027	F001043	N/A	MNQQDILGDNMSDYKDGFDDGYKFAREEMMERLSEIDINDIDTWILDRLCEMIEGGKL
Ga0207193_101643028	F000311	GAG	MYFELTAPDRLSMEMAYWDAQMIGLDPTALSPLTFNIGTGSIEKVSRIRDKYNLVESYTSDYEPTGYTRR
Ga0207193_101643029	F003422	N/A	MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPSNQTKEETMEETTTPAVTVPDTYNANLLVTYKVIRGYSDAEYATDKVASIEWDLHNGRQSQKRVTTLLSQIDSVKDIITEAYADSDDQDTLRAIAEALGIELTREVEWSATIEVSGTISVDLLEGDVDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN
Ga0207193_10164304	F073565	AGGAG	MTNGNDLTGFNEVKAPTTTAWNGEQYAADPASAFPATDKSTQDGSGVGNGGK
Ga0207193_10164305	F001280	GGCGG	MCIECGCEAFGSETGIVPVTVTDVSTDGESGLTLSMTSTPEQTRQFINE
Ga0207193_10164306	F026561	N/A	MSNFQKDDGTGMTPPPAAGSASGAVTSREATRKNPKQGFRSGIKIDTNKHGIRRETSLDPKPPRKTRPKKV
Ga0207193_10164307	F006846	N/A	MESLHGKRIQKMIHDLVEKYLMRPKRLREAIEAVVHDNDELLRILKEHEEDKTPTNLTWAEGDTWYGWTYSPEKKRYYFDDIGNKSLMGLWEDQWAREKERG