Scaffold Ga0207193_1002988

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1002988
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28916
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (14.29%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F044503	Metagenome	154	Y
F055561	Metagenome	138	N
F069854	Metagenome	123	N
F095170	Metagenome	105	N
F104771	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_10029882	F055561	N/A	MSFAEYQSIAYGYQIRQSKEENLFRTIWVQLNNVNVTKKGDLIRKPDKYWRIPLIDAKPILIPTAEEKAKAYEIGLTWQNLKFEEEANFDTITNKIQ
Ga0207193_100298820	F005529	N/A	MPRIPPVKTDYSLEIRYRLRDGQWSPWSNKGKGKFECIELVQRQIRTLAASYQGREKEVRFEWNGKLCSFTGEPTGQTILLM
Ga0207193_100298825	F008073	N/A	MDEIILTHLRKMEFVCGLKQFKEYKKEEANELLGCLSKLFGSYGWMTEDRVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKEKEPTNEEIAYWIEVGKQTFRDNYQEAKETGNCKHLADWGMYWFNKFQEKGILKPWEFNVEEIESDVRRELRLTTRYVEESTVGAKTKNKIWKLFILQAIKDDKNLDQLI
Ga0207193_100298828	F044503	GGA	MRRRNLTEYEKQLIFEKWQDRTPTKVIALEMGVSYMCIYNQLKKRYLVG
Ga0207193_100298832	F030017	N/A	MEFDEVMIKIKALYLEGLTRKKIANVVGLDQQKVGYLLYTKMRLHELYPRKLMDENIFQILTDHQISRILTLATYGYDCREIAEDQNLEFRKVKKLLDVAESKNMIEKKV
Ga0207193_100298833	F024318	N/A	MRNYLYLGKFIQRPGDLAPRGVASTYNEEKLPFNETFERLWNLMK
Ga0207193_100298836	F104771	N/A	MGKLFNDSEMYLDQEVLFFYEGEEYCWTGHYEIKQCGEESDWDYCGDSEIEVEIETTKSITKFNEETNGWDEVTPTNSLIYELVINIERNL
Ga0207193_100298839	F001775	N/A	MKELLDDERIRIAIVSFLIGVLLAFVIFPRPESETVYKFETVTKTDTLIVDKVETVYIPKTKIKTEVLRDTVLVNFKPQISQFNASFPFEYGSTNVSGEVLGEVLKMTATSDFKIPVVTNTITNTETKTIVQKPKGIYLGAGVNSLIQPSASVSYLDNKYIFQYQFQPLEKLHTVSVSKKLF
Ga0207193_100298846	F014605	N/A	MIVNLAIALTDIEGNKITNENGEFMYLSKMVGNALFSAEEKDDPIRIYELAKKIYYSDGDVELSKSDADLVKEKVKAKGFTVLVLGPLYEALKEK
Ga0207193_10029885	F095170	GGA	MAKVNGSALFVTVGLNQVAKSTSYELSAEMGQLDKTSNESGFFADHILRLASWSLSSESLYIQDGFSFSDLFNAYVNRERVYLSAGQEDNLTFIGLAMIESISQSAPMENVATISASFKGVGGLYPTILPAERFIVDELFEIIIDQDGNFLVYT
Ga0207193_10029886	F069854	N/A	MRNIKPFIRKAYWTALNNTITYKGALVPCYDTFAPDTAVFPYILIGNQTQEDDKDNQQFNYITTITLDVVTAGIAPYGRIDADLIADSILQIVCNYPENYLPLQIGKIVTEKLVQQTSLSSITDTNIVHREILTIENWIDGQG