Scaffold Ga0207193_1001641

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1001641
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39941
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (33.80%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017800	Metagenome / Metatranscriptome	238	Y
F019994	Metagenome / Metatranscriptome	226	Y
F031848	Metagenome / Metatranscriptome	181	N
F079625	Metagenome / Metatranscriptome	115	Y
F081032	Metagenome / Metatranscriptome	114	N
F084134	Metagenome / Metatranscriptome	112	N
F085605	Metagenome	111	N
F086647	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100164113	F017800	N/A	MKTTALGILTIVATLSSVGIQVLKGGAPDLIGAFAAITAGVGLIKARDNK
Ga0207193_100164127	F084134	GGGGG	MKKQAKKATKRGRPAKKTLIIDESPCSINSLVNQQIEDDFLVMRICNNPSWVIVRMDGLAVPVKCPVRTSNKLVGKRIKVCLVSADPEDYYEYAL
Ga0207193_100164137	F019994	N/A	MSSPVSYDLQGQGGGIVLSTAATTYTGKIRWIQVVNDAVLATVASASGSITGATRLTAITLPAGLGIGGDFSQVILTSGVVIVYYA
Ga0207193_100164145	F079625	AGG	MNFACTRCGSRHWPDPDSSCPLCNDGREEPAEALGGPLGAHEQAVKRFMADGCKKHSASHWWKQIDEQTDEDQPPEMMADRLAWLHGEACRDAWEDMEEPPSHYAWADACALAGFDMAKHYKKTNQ
Ga0207193_100164155	F081032	N/A	MRVTHTPYKTKTRAIGSDLELTIALIGALRSPTTSKLGKFQKITGILTKLLK
Ga0207193_100164158	F086647	N/A	MEIEILSSVDAAINGYLSLTTPYDQSRPEEVQWMKNVLSDLKGCSVVIVETSLGYEVARHKSEMILAEPRK
Ga0207193_100164159	F031848	N/A	MSDFFPEMNGNLSPRLKWQELKRIKTLRREDGKWVAFKSDTSHSFTDEVELDAVIGLAKKLKLKIWNQ
Ga0207193_10016417	F085605	N/A	MSNYTKDNGFRIITGRPRLKPWEQRITASFRLTYETYQRIQRLAKREGIVPSKALELLVRTAESEKIEPTQVVDYSKINHRGTGYTVTNILDKHFK