NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1011542

Scaffold Ga0181359_1011542


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1011542 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3177
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F007747Metagenome / Metatranscriptome345Y
F016963Metagenome243N
F020510Metagenome / Metatranscriptome223Y
F081048Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10115421F007747AGGAGMKDLGKITFGKSRPAPKQILVDVTYDGKTAKALHAFGLKQLKKDPEAVIEYVIVKALVSF
Ga0181359_101154210F016963N/ARSTTRARCRMIEVLPDETTHDQLLNRVRSLARQLAEAKAALAASEARENDLIDRIRGGL
Ga0181359_10115423F081048GGAMSVKRLTWQIEILERAKKSLLDGRLVIARSRLDMALHIAKELLKRAQTYQKRDAEKKK
Ga0181359_10115425F020510N/AMNISDLLIMFSGRVIGTYTPEQYANCVLEARANRMRWGMGQW
Ga0181359_10115429F005502AGGTGGMRVAACIAALLGLANSQGANVMIDLRPQPKKIKVRITGYWPGEDEWSSRYQSSTGTKLRAGRHCAVDPDIIPLWSKIRILNGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFKAMRLPKVAMVEVMK
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