Scaffold Ga0181359_1004933

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1004933
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4289
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F028166	Metagenome / Metatranscriptome	192	Y
F031101	Metagenome	183	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y
F091936	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100493313	F031101	GGGGG	MNDLFWYSRQLREAVSTTGMENGWNDEKCKEVFDQLMDKYLVSKDLK
Ga0181359_10049332	F028166	AGGAG	MTNGIDTTGFNETKAGDTNNLDLNPTGQAPAAAFPATDKSTQDGAGLGQNGK
Ga0181359_10049333	F088905	N/A	MSEKDIDTTPVVEVKEEVKVEPKAEAKSAPVADSTDYWANAWANRGV
Ga0181359_10049334	F001280	GAGG	MCIECGCESLGSETGIIPVTITDASRDGESGLTLAMTSTPEQTRQFINE
Ga0181359_10049335	F078716	N/A	MSENGTGTPTAPISEPSGALTSREVPRKYPKQGSRPGIKIDRNKHGIRRETSLDPKPQKKGRPKKV
Ga0181359_10049337	F091936	AGGA	MTEMTSVGDDFDRSMRLKRVIEEMLKDIDMSGEEWNDRDKDGVAYWEKWNKND