Scaffold Ga0181359_1000201

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000201
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12540
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073074	Metagenome	120	N
F081069	Metagenome	114	Y
F096875	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100020110	F081069	N/A	MSDRQWIIFNELGGAEWLREFLEKKAPMPKQYYDKLLQEKQND
Ga0181359_10002012	F073074	GGA	MDIITKTARDAARLLNAIRAQYIIVLPTGEQIIQGDLKLHVPDDKPQRKVRAQSRHPHGFLNNYILPFIQHLGIGDVAVIPVPSGADMDEIQGSGASASARLWGNGNYKTMRNDKTGCLEVLRMA
Ga0181359_10002017	F096875	GGA	MYRIVKMPKSGRWKVTVFLGAEAKLNASYTNEALPEWVRKDIALLSMVHHMDDIPSIGHRLGEVYWLIPKDKDESCTGI