Scaffold Ga0181359_1000086

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1000086
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 17986
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004344	Metagenome / Metatranscriptome	442	Y
F020909	Metagenome	221	Y
F024097	Metagenome / Metatranscriptome	207	N
F025466	Metagenome / Metatranscriptome	201	Y
F054668	Metagenome / Metatranscriptome	139	Y
F058137	Metagenome	135	Y
F096878	Metagenome / Metatranscriptome	104	N
F101146	Metagenome / Metatranscriptome	102	N
F104767	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100008610	F058137	GAG	MCGVVMVGKKIRSVRVSDQVWAKAKAKAQSEGKSVSEVIVDFLKGYIK
Ga0181359_100008616	F025466	AGGA	MMFDKVKLEAIAKTYLRAAAAAVVALYLADPNQPVKNYLAAGLAAVAGPVLKALDSKSTEFGRGSK
Ga0181359_100008620	F054668	AGGAG	MGISTRQVTVTTSPTALVDATQEAEMVYLHSSSGTCFLGNSDVTTSTGYRMDNGDKLTVENKANGIWAITSSGTVIMQVMAIGK
Ga0181359_100008631	F004344	AGGGGG	MDGLSIKVKTIDGVDKTFSLRPRIIVDFEQKYGKGLAKLIGEEQKLEHIYYLGWLALKSNGHIVKPFGPEFLDTLESVSLDSNPNFESTETV
Ga0181359_100008634	F101146	AGGAG	MAYIVTSDREVCGKTAGDILTVKELQDAGVSAENLIAGNHIKASNTTQETPSIKTEIKEGATN
Ga0181359_100008637	F104767	AGAAG	MREVADPNQGTDWCWFWDGPVNGEWIGEDLLFSRRIKSLGYPIHVNTSVILPHQKSFWLDESHHEAWKD
Ga0181359_10000864	F024097	N/A	MKWLREHGVSAERLSKAGSADEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYAIARGLKQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE
Ga0181359_10000865	F096878	N/A	VAIYLEERDANLDLVEDVLAAVPMAHLESIESLLITDLKSSDAARMMDKARSAVPDLAIKLASVSESEALTLAEQLITAVKYARAMRSQPQGVKLELVK
Ga0181359_10000869	F020909	N/A	MECRTGMERGWNNRMITKRGKKVRAIAFAVGIIVIWQVAMNLWWVGIDAPNAEFLGWCWGSMSECVVL