Scaffold Ga0194029_1001206

Overview

Basic Information

• Taxon OID: 3300019751
• Scaffold ID: Ga0194029_1001206
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3272
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F014069	Metagenome / Metatranscriptome	266	N
F018266	Metagenome / Metatranscriptome	236	N
F023860	Metagenome / Metatranscriptome	208	N
F026154	Metagenome / Metatranscriptome	199	Y
F080091	Metagenome / Metatranscriptome	115	N
F085570	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194029_10012061	F080091	GAGG	MNLKLWKFLSVRIKVEDHNGKIHWYDESDCNEHDIGIEWDIEDIINKQGGTFDEEEVGKKQDT
Ga0194029_100120610	F085570	GGA	MHIDSYKIWSYDYDYKNGKKSKTTSIKQHLVSEECIDSKSLINLLSDLDTAWHNHYSKNIKVEVTFEPHEGE
Ga0194029_100120611	F023860	AGGAG	MDKLKEMFELRNAIRHFLESKLEAKVQGAGMSISEPSSADISFKIDNTNYVLTIDEV
Ga0194029_10012062	F018266	AGGAGG	VFRVILEGKFRENPINLSRAVKLLYNQDFTGSIRLENLLWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKPSIRVVTIPSSPDKRELLVLNKIYGGNNG
Ga0194029_10012064	F026154	AGGA	MNGIINIVRFVAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDNEYYHTKSKYIRLTKLKEEHEAYRKSRRDNS
Ga0194029_10012066	F014069	AGGAGG	METVKAPINERVATKVMPLTKWFVEQYFQTYELMSSDPRFKTLPAYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKAVNE
Ga0194029_10012067	F003834	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVRVLYDDHAKFANEMDSILLQKKGKLDNAIHVLEDKLEQWKKVRKWKNEISSSLLREPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIPKPEFLSITK
Ga0194029_10012068	F003677	AGG	MVDEALYFFEKDVGKKVYEMEYEITYATKWQILAEDKDQAFKIWLENHKVDIATEDGKDVVCSYVKDYTQIGSTKEIAKIKLDIDNDEVIADES