Scaffold Ga0193578_100305

Overview

Basic Information

• Taxon OID: 3300019090
• Scaffold ID: Ga0193578_100305
• Source Dataset Name: Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea - KM3-8
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Woods Hole Oceanographic Institution
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3571
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Metatranscriptome Of Marine Microbial Communities From Deep Sea Water Colum In Eastern Mediterranean Sea

Source Dataset Sampling Location

• Location Name: Eastern Mediterranean Sea
• Coordinates
  • Lat. (^o): 36.29
  • Long. (^o): 15.39
  • Depth (m): 2200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013050	Metagenome / Metatranscriptome	275	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193578_1003052	F013050	AGG	MSKGKQPRTRVNKVPKLLLSEIKAVFILNSQAIGLESANF