3300019090: Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea - KM3-8

Overview

Basic Information

• IMG/M Taxon OID: 3300019090
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129122 | Gp0217198 | Ga0193578
• Sample Name: Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea - KM3-8
• Sequencing Status: Permanent Draft
• Sequencing Center: Woods Hole Oceanographic Institution
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31161026
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Deep Sea Water Colum In Eastern Mediterranean Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Metatranscriptome Of Marine Microbial Communities From Deep Sea Water Colum In Eastern Mediterranean Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): mediterranean sea biome → marine benthic feature → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Eastern Mediterranean Sea
• Coordinates
  • Lat. (^o): 36.29
  • Long. (^o): 15.39
  • Alt. (m): N/A
  • Depth (m): 2200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013050	Metagenome / Metatranscriptome	275	Y
F013096	Metagenome / Metatranscriptome	274	Y
F028684	Metagenome / Metatranscriptome	190	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193578_100305	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3571
Ga0193578_112352	All Organisms → cellular organisms → Archaea	655
Ga0193578_117120	All Organisms → cellular organisms → Archaea	543
Ga0193578_118345	All Organisms → cellular organisms → Eukaryota → Sar	520
Ga0193578_118404	All Organisms → cellular organisms → Archaea	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193578_100305	Ga0193578_1003052	F013050	MSKGKQPRTRVNKVPKLLLSEIKAVFILNSQAIGLESANF
Ga0193578_112352	Ga0193578_1123522	F013096	MSTDVVGDSAVGLSTLSQTNTVAVYDPEALGVHDNAGLIDCPPVKEPVIHANDTVTPSPSRKLVVTLEYSRPS
Ga0193578_117120	Ga0193578_1171202	F013096	VVGDSAVGLSTLSQTNTVAVYDPESLGVHDNAGLIDCPAVKDPVIHANDTVTPSPSCTCTKYANA
Ga0193578_118345	Ga0193578_1183451	F028684	TTEKMISDIETFVKEATEIRNTGKKENALAIKDAKDAQNSLTNAIAVLEAFYKESGEIPKEPWEFIQKPVNLPKNPATWDSPYTGVADPDKQPGGIVSVLEGVLSDFAKMEAETKSQEAQDQAEYDESMQSNDIEKAGRTQEVTMKTAEKARRADKIATLSGTKKDTEGDTSN
Ga0193578_118404	Ga0193578_1184042	F013096	MSTDVVGDSAVGLSTLSQTNTVAVYDPEALGVHDNAGLIDCPPVKEPVIHANRHIHSRYI