Scaffold Ga0188867_1000236

Overview

Basic Information

• Taxon OID: 3300018642
• Scaffold ID: Ga0188867_1000236
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS695_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2027
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033501	Metagenome / Metatranscriptome	177	Y
F067130	Metagenome / Metatranscriptome	126	N
F080236	Metagenome / Metatranscriptome	115	N
F085730	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188867_10002361	F033501	N/A	MNAEEFVNEMDMIAQNYFGEFGYDTCSSGEKKAVIQLLLHNTK
Ga0188867_10002363	F080236	AGGA	MNNIYDKKFEIYLVQKGYDLNCISLNECLKEIKLWKKNTENV
Ga0188867_10002364	F067130	N/A	MQIEIDTVDLQNTLEQLYDRKVKLVAYASADGLDTLVLEGHEEDLFNFYLESFNPFNEWTNTDVVRSEFFAHILTK
Ga0188867_10002365	F085730	N/A	MNYKEENWYNDIIDRLKDNEGMDQDDFYDVLHQEIDNMVIYNSESQRIVDDLNYDVFQEHDVYGRADNIGQAAYAALYDLFEEGDFTYEDYNNKPITQ