Scaffold Ga0190274_12830063

Overview

Basic Information

• Taxon OID: 3300018476
• Scaffold ID: Ga0190274_12830063
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 581
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Montana
• Coordinates
  • Lat. (^o): 45.6356
  • Long. (^o): -110.571

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072036	Metagenome / Metatranscriptome	121	Y
F080015	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190274_128300631	F080015	N/A	NPRDDTPFVDLAERLVADGVRSPKELQDRLRREYPDAVVRARELDGEAFTIWYVYRDGHWVSGVRGEPQGG
Ga0190274_128300632	F072036	N/A	VSEGNHREADVSELENDLRATAEDIAADATRLAEIEDEKAGLEADDPRLVELSAEGEELARRLVPKTAAESELAAEALATDGGAA