Scaffold Ga0190270_10530062

Overview

Basic Information

• Taxon OID: 3300018469
• Scaffold ID: Ga0190270_10530062
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1130
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.136
  • Long. (^o): -111.9047

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020392	Metagenome / Metatranscriptome	224	N
F024600	Metagenome	205	Y
F075894	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190270_105300621	F024600	N/A	NNRVIDLETLEDNMSKVKNYCSDEKNFKVPVMKAVEQVLGKSN
Ga0190270_105300622	F075894	AGGAG	MANLKGMNIEPLMKLRNQVDERHLSVAIGVGGAIALAIIGYLLHWISS
Ga0190270_105300623	F020392	GGAG	MGLAMETICTFFLNYEQYIILLTMCFFAGMAWRHHRLISRLFIIAASCLWVIYVYRYQIAVGWPALDASGELSLRELFSDGAFIRHWFYLLSAAALGGALGVAFDDTPRRNFFAENEIERKLDRMMEELRPTAIGYPAGRGNHELIQCSK