Metagenome Family F075894

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075894
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	46 residues
Representative Sequence	MPNLKGMNVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISS
Number of Associated Samples	81
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.12 %
% of genes near scaffold ends (potentially truncated)	27.12 %
% of genes from short scaffolds (< 2000 bps)	88.14 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.407 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (52.542 % of family members)
Environment Ontology (ENVO)	Unclassified (55.085 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.712 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.26% β-sheet: 0.00% Coil/Unstructured: 44.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00816	Histone_HNS	9.32
PF03869	Arc	3.39
PF13683	rve_3	2.54
PF13432	TPR_16	1.69
PF14023	DUF4239	1.69
PF01527	HTH_Tnp_1	0.85
PF13676	TIR_2	0.85
PF08541	ACP_syn_III_C	0.85
PF04241	DUF423	0.85
PF00144	Beta-lactamase	0.85
PF01926	MMR_HSR1	0.85
PF00589	Phage_integrase	0.85
PF11154	DUF2934	0.85
PF11149	DUF2924	0.85
PF13305	TetR_C_33	0.85
PF13183	Fer4_8	0.85
PF05068	MtlR	0.85
PF04392	ABC_sub_bind	0.85
PF05532	CsbD	0.85
PF00072	Response_reg	0.85
PF03401	TctC	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2916	DNA-binding protein H-NS	Transcription [K]	9.32
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.85
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG2363	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family	Function unknown [S]	0.85
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.85
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.85
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.85
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.85
COG3722	DNA-binding transcriptional regulator, MltR family	Transcription [K]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.41 %
Unclassified	root	N/A	35.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.41 %
Unclassified	root	N/A	35.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.41 %
Unclassified	root	N/A	35.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	38.98 %
Unclassified	root	N/A	35.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.59 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.56 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.71 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.02 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.63 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.69 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.85 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.02 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.69 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	0.85 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	0.85 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.02 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.39 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.69 %
Bradyrhizobium zhanjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	0.85 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.85 %
Pelomonas saccharophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → Pelomonas saccharophila	0.85 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.02 %
Bradyrhizobium sp. 187	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	2.54 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.69 %
Bradyrhizobium sp. ERR14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ERR14	0.85 %
Bradyrhizobium zhanjiangense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	0.85 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.85 %
Pelomonas saccharophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → Pelomonas saccharophila	0.85 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100238772	Not Available	556	Open in IMG/M
3300000550\|F24TB_10017026	All Organisms → cellular organisms → Bacteria → Proteobacteria	2635	Open in IMG/M
3300000550\|F24TB_10440313	Not Available	541	Open in IMG/M
3300002911\|JGI25390J43892_10025733	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300002917\|JGI25616J43925_10285531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	616	Open in IMG/M
3300005174\|Ga0066680_10970535	Not Available	500	Open in IMG/M
3300005187\|Ga0066675_10613628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	817	Open in IMG/M
3300005445\|Ga0070708_100464804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1194	Open in IMG/M
3300005447\|Ga0066689_10394301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium zhanjiangense	865	Open in IMG/M
3300005467\|Ga0070706_100426264	All Organisms → cellular organisms → Bacteria → Proteobacteria	1234	Open in IMG/M
3300005467\|Ga0070706_100723502	Not Available	923	Open in IMG/M
3300005468\|Ga0070707_100982350	Not Available	810	Open in IMG/M
3300005554\|Ga0066661_10835199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	539	Open in IMG/M
3300005554\|Ga0066661_10905735	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300005559\|Ga0066700_10354124	Not Available	1037	Open in IMG/M
3300005561\|Ga0066699_10169781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1502	Open in IMG/M
3300006028\|Ga0070717_10093656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2540	Open in IMG/M
3300006046\|Ga0066652_102031194	Not Available	511	Open in IMG/M
3300006050\|Ga0075028_100742422	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300006796\|Ga0066665_11254226	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300006797\|Ga0066659_10225080	All Organisms → cellular organisms → Bacteria → Proteobacteria	1389	Open in IMG/M
3300009038\|Ga0099829_10539552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	969	Open in IMG/M
3300009090\|Ga0099827_10510158	All Organisms → cellular organisms → Bacteria → Proteobacteria	1033	Open in IMG/M
3300010038\|Ga0126315_11233225	Not Available	509	Open in IMG/M
3300011269\|Ga0137392_10413587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1120	Open in IMG/M
3300011270\|Ga0137391_10399962	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300012189\|Ga0137388_10128310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2219	Open in IMG/M
3300012189\|Ga0137388_10445121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1201	Open in IMG/M
3300012198\|Ga0137364_10434105	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300012198\|Ga0137364_10690566	Not Available	770	Open in IMG/M
3300012198\|Ga0137364_11084512	Not Available	603	Open in IMG/M
3300012199\|Ga0137383_10124497	All Organisms → cellular organisms → Bacteria	1882	Open in IMG/M
3300012199\|Ga0137383_10282418	Not Available	1216	Open in IMG/M
3300012199\|Ga0137383_10394662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1014	Open in IMG/M
3300012200\|Ga0137382_10319711	Not Available	1085	Open in IMG/M
3300012200\|Ga0137382_11324872	Not Available	507	Open in IMG/M
3300012201\|Ga0137365_10010481	All Organisms → cellular organisms → Bacteria	7339	Open in IMG/M
3300012201\|Ga0137365_10403371	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300012201\|Ga0137365_10561255	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300012201\|Ga0137365_10642798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ERR14	777	Open in IMG/M
3300012201\|Ga0137365_10957796	Not Available	622	Open in IMG/M
3300012202\|Ga0137363_10319745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1278	Open in IMG/M
3300012202\|Ga0137363_10810589	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300012202\|Ga0137363_11527491	Not Available	559	Open in IMG/M
3300012204\|Ga0137374_10276134	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300012204\|Ga0137374_10279535	Not Available	1381	Open in IMG/M
3300012205\|Ga0137362_10402377	Not Available	1186	Open in IMG/M
3300012205\|Ga0137362_11173765	Not Available	652	Open in IMG/M
3300012206\|Ga0137380_10129117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	2308	Open in IMG/M
3300012206\|Ga0137380_10645197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	923	Open in IMG/M
3300012206\|Ga0137380_10891829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	764	Open in IMG/M
3300012207\|Ga0137381_10164607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1913	Open in IMG/M
3300012208\|Ga0137376_10061006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3110	Open in IMG/M
3300012208\|Ga0137376_10743686	Not Available	845	Open in IMG/M
3300012210\|Ga0137378_11115919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	704	Open in IMG/M
3300012211\|Ga0137377_11680685	Not Available	557	Open in IMG/M
3300012353\|Ga0137367_10112539	Not Available	2002	Open in IMG/M
3300012355\|Ga0137369_10463838	Not Available	901	Open in IMG/M
3300012356\|Ga0137371_10631647	Not Available	821	Open in IMG/M
3300012357\|Ga0137384_10162836	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
3300012357\|Ga0137384_10343991	Not Available	1236	Open in IMG/M
3300012357\|Ga0137384_10670586	Not Available	843	Open in IMG/M
3300012358\|Ga0137368_10507934	Not Available	776	Open in IMG/M
3300012358\|Ga0137368_10693135	Not Available	641	Open in IMG/M
3300012359\|Ga0137385_11000285	Not Available	690	Open in IMG/M
3300012360\|Ga0137375_11333666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300012361\|Ga0137360_10431580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1114	Open in IMG/M
3300012361\|Ga0137360_10838272	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300012361\|Ga0137360_10965223	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300012361\|Ga0137360_11699333	Not Available	537	Open in IMG/M
3300012362\|Ga0137361_10308961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1447	Open in IMG/M
3300012362\|Ga0137361_10652128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	963	Open in IMG/M
3300012362\|Ga0137361_10682476	Not Available	939	Open in IMG/M
3300012362\|Ga0137361_11178197	Not Available	688	Open in IMG/M
3300012532\|Ga0137373_10392304	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300012582\|Ga0137358_10308212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1075	Open in IMG/M
3300012918\|Ga0137396_10316564	Not Available	1154	Open in IMG/M
3300012923\|Ga0137359_10213788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1722	Open in IMG/M
3300012923\|Ga0137359_10598839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	967	Open in IMG/M
3300012924\|Ga0137413_10160523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1478	Open in IMG/M
3300012929\|Ga0137404_10538938	Not Available	1044	Open in IMG/M
3300012957\|Ga0164303_10472569	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
3300012985\|Ga0164308_10748512	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300012988\|Ga0164306_10788043	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300015264\|Ga0137403_10118197	All Organisms → cellular organisms → Bacteria	2644	Open in IMG/M
3300015374\|Ga0132255_102536120	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300018027\|Ga0184605_10314363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300018028\|Ga0184608_10136897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1048	Open in IMG/M
3300018054\|Ga0184621_10248140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	635	Open in IMG/M
3300018469\|Ga0190270_10530062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1130	Open in IMG/M
3300018481\|Ga0190271_12703707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 187	596	Open in IMG/M
3300021078\|Ga0210381_10393863	Not Available	511	Open in IMG/M
3300022756\|Ga0222622_11381181	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300025910\|Ga0207684_10136922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2103	Open in IMG/M
3300025910\|Ga0207684_10436167	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300025910\|Ga0207684_11298420	Not Available	599	Open in IMG/M
3300025922\|Ga0207646_11497578	Not Available	584	Open in IMG/M
3300026304\|Ga0209240_1102967	Not Available	1017	Open in IMG/M
3300026310\|Ga0209239_1002106	All Organisms → cellular organisms → Bacteria	11888	Open in IMG/M
3300026310\|Ga0209239_1176967	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300026319\|Ga0209647_1122296	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300026319\|Ga0209647_1122706	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300026490\|Ga0257153_1006639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2277	Open in IMG/M
3300026551\|Ga0209648_10111553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2223	Open in IMG/M
3300026551\|Ga0209648_10316315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1104	Open in IMG/M
3300027748\|Ga0209689_1028168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3373	Open in IMG/M
3300027903\|Ga0209488_10199425	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300027903\|Ga0209488_10858783	Not Available	639	Open in IMG/M
3300028708\|Ga0307295_10169829	Not Available	611	Open in IMG/M
3300028716\|Ga0307311_10156936	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300028768\|Ga0307280_10352956	Not Available	543	Open in IMG/M
3300028784\|Ga0307282_10104490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1317	Open in IMG/M
3300028811\|Ga0307292_10098312	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300028878\|Ga0307278_10004298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → Pelomonas saccharophila	6876	Open in IMG/M
3300028878\|Ga0307278_10315571	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300028885\|Ga0307304_10102802	Not Available	1144	Open in IMG/M
3300032180\|Ga0307471_101017088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	996	Open in IMG/M
3300033551\|Ga0247830_10461417	Not Available	996	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.15%
Host-Associated	Host-Associated	0.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.07%
Aquatic	Environmental → Aquatic	5.08%
Plants	Host-Associated → Plants	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.07%
Sediment	Environmental → Aquatic → Sediment	4.24%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.75%
Loam	Environmental → Terrestrial → Soil → Loam	9.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.24%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	64.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	52.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.54%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.69%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1002387721	3300000364	Soil	MPNLKLEALMKLRNQVDERLVAVAIGVGVAIALAII
F24TB_100170265	3300000550	Soil	MPTLKGMNVEALIKLRNQVDERLLTVAIGVGVGIVLAIIGYL
F24TB_104403132	3300000550	Soil	MASLKGMNVEALMKLRVDERLLDVAIGVGGAIALAIIGYL
JGI25390J43892_100257332	3300002911	Grasslands Soil	MPNVKGMNVQALMKLQVDERLLAVAIGVGGAIALAIIGYLLHWISS*
JGI25616J43925_102855311	3300002917	Grasslands Soil	MPSLKGINVEALMKLRDQVDERVLFVAIGLGVGIALAIIG
Ga0066680_109705352	3300005174	Soil	MAARDPTDRRIIMPNLKGMNVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISS
Ga0066675_106136281	3300005187	Soil	MPNLKGMNVEALMKLRNQVDERLVFAAIGLGVGIALAIIGYLLGWISS*
Ga0070708_1004648042	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPNLKGMNVEALMKQVDERVLFVAIGLGVGIALAIIGYLLHWISS*
Ga0066689_103943011	3300005447	Soil	MANLKGMNVEALMKLRDQVDEGLLGVAIGVGVGIALAIIGYLL
Ga0070706_1004262642	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPTLKGMNVEALMKLRNQVDEWLPTVAIELGVGIALAIIGYLLHWISA*
Ga0070706_1007235023	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPNLKGMNVEALMKLRNQIDEWGVTVAIGVGVGIALAIIGYLLHLI*
Ga0070707_1009823501	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPNLKRMNVEALMNLRNQVDERLLFVAIGLGVGIALAIIGYLLHWISS*
Ga0066661_108351991	3300005554	Soil	MPSLKGMNVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISS*
Ga0066661_109057351	3300005554	Soil	MPNVKGMNVQALMKLQVDERLLAVAIGVGGAIALAIIG
Ga0066700_103541243	3300005559	Soil	MPNLKGMNVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISA*
Ga0066699_101697811	3300005561	Soil	MPNLKGMNVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISS*
Ga0070717_100936566	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPNLKGMNVEALMKLRNQVDERLLTVAIGVGVGIALAIIGYLLHWISS*
Ga0066652_1020311942	3300006046	Soil	MPNLKGMNVEALMKLRNQVDERLVFAAIGLGVGIALAII
Ga0075028_1007424222	3300006050	Watersheds	MPNLKGMNVEALMKLRNQVDERLLFVAIGVGVGIALAIIGYLLHWISS*
Ga0066665_112542261	3300006796	Soil	HRRTPCQILNGINIEALRKLRNQVDERLLAVAIGVGVGIALPIIGYLLHWISA*
Ga0066659_102250802	3300006797	Soil	MPNLKGMNVEALMKLRNQVDKRLLAVAIGVGVGIALAIIGYLLHWISS*
Ga0099829_105395522	3300009038	Vadose Zone Soil	MPSLKGINVEALMKLRDQVDERVLFVAIGLGVGIALAIIGYLLHWISA*
Ga0099827_105101581	3300009090	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLFVAIGLGVGIALAIIGYLLHWISS*
Ga0126315_112332251	3300010038	Serpentine Soil	MANLKGMNVEALMKLRNQVDEKFLAVAIGVGGAIALAIIGYLLHWISS*
Ga0137392_104135872	3300011269	Vadose Zone Soil	MANLKGMNVEALMNLRNQVDERLLTVAIGVGVAIALAIIGYLLHWISS*
Ga0137391_103999623	3300011270	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLFVAIGLGVGIALAIIGYLLHWISA*
Ga0137388_101283104	3300012189	Vadose Zone Soil	MPNLQGMNVEALMKLRNQVDERLLTVAIGLGVGIALAIIGYLLHWISS*
Ga0137388_104451213	3300012189	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLAVAIGVGGAIVLAIIG
Ga0137364_104341051	3300012198	Vadose Zone Soil	MNVQALMKLQVDERLLAVAIGVGGAIALAIIGYLLHWISS*
Ga0137364_106905662	3300012198	Vadose Zone Soil	MNVEALMKLRDQVDERVLFVAIGLGVGIALTIIGYLLHLISA*
Ga0137364_110845122	3300012198	Vadose Zone Soil	MPNPKGINVEALMKLRNQIYERHLAVAIGVGVGIALAIICYLLHWISA*
Ga0137383_101244972	3300012199	Vadose Zone Soil	MTINLKGIEALIKHERFVTVAIGVGLGIALAIIGYLLGWISS*
Ga0137383_102824182	3300012199	Vadose Zone Soil	MPNLKGMNVEALMNLRDQVDEWLPTVGIGVVVGIALAIIGYLLHLI*
Ga0137383_103946622	3300012199	Vadose Zone Soil	MPNLKGMNVEALMKLRDQVDERVLFVAIGLGVGIALAIIGYLLHWISA*
Ga0137382_103197112	3300012200	Vadose Zone Soil	MPSLKGINVEALMKLRDQVDERVLFVAIGLGVGIALAIIGYLLHWISA
Ga0137382_113248721	3300012200	Vadose Zone Soil	LMKLQVDERLLAVAIGVGGAIALAIIGYLLHWISS*
Ga0137365_1001048113	3300012201	Vadose Zone Soil	MPNPKGINVEALMKLRNQIDERHLAVAIGVGVGIALAIIGYLLHLISA*
Ga0137365_104033713	3300012201	Vadose Zone Soil	MPNLKGMNLQALTKLQVDERLLAVAIGVGGAIAFSIIGYLLHWISS*
Ga0137365_105612551	3300012201	Vadose Zone Soil	MPNLKGINVEALMNLRNQIDERHLALAIGVGVGIALAIIGYLLHWISS*
Ga0137365_106427981	3300012201	Vadose Zone Soil	MPNPKGINVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISA*
Ga0137365_109577961	3300012201	Vadose Zone Soil	RLRNQVDERHLAVAIGIGVGIALTIIGYLLHLISS*
Ga0137363_103197452	3300012202	Vadose Zone Soil	MPSLKGMNVEALMKLRNQVDERLLAVAIGVGGAIVLAIIGYLLHLISA*
Ga0137363_108105892	3300012202	Vadose Zone Soil	MNFEALMKLRNQVDERLLGVAIGVGVGIALAIIGYLLHLISS*
Ga0137363_115274911	3300012202	Vadose Zone Soil	MANLKGMNVEALMKLRNQVDEWLLTVAIGVGVGLALAIIGYLLGWISA*
Ga0137374_102761343	3300012204	Vadose Zone Soil	MPNPKGINVEALMKLRNQVDERHLAVAIGVGVGIALAIIGYLLHWISS*
Ga0137374_102795352	3300012204	Vadose Zone Soil	MPNLKGMNVEALMRLRNQVDERHLAVAIGVGGAIALTIIGYLLHLIST*
Ga0137362_104023771	3300012205	Vadose Zone Soil	MKLRDQVDERLVFAAIGVGVGIALAIIGYLLGWISS*
Ga0137362_111737651	3300012205	Vadose Zone Soil	SQSHSRTEEETMTINLKGIEALMKHERFLPVVIGLGVGIALAIIGYLLGWISA*
Ga0137380_101291174	3300012206	Vadose Zone Soil	LTQRALPVIMPSLKGMNVEALMKLRNQVDERLLGVAIGVGVGIALAIIGYLLHWISS*
Ga0137380_106451972	3300012206	Vadose Zone Soil	MPNLKGINVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISA*
Ga0137380_108918293	3300012206	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLGVAIGVGVGIALA
Ga0137381_101646071	3300012207	Vadose Zone Soil	IMPNLKGMNVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISS*
Ga0137376_100610061	3300012208	Vadose Zone Soil	MANLKGMNVEALMKLRNQVDERVLFVAIGVGVGIALAI
Ga0137376_107436862	3300012208	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLTVAIGLGVGIALAIIGYLLHWISS*
Ga0137378_111159191	3300012210	Vadose Zone Soil	MKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISA*
Ga0137377_116806852	3300012211	Vadose Zone Soil	MANLKGMNVEALMKLRNQVDERVLFVAIGVGVGIALAIIGYLLHWISS*
Ga0137367_101125395	3300012353	Vadose Zone Soil	MNVEALMKLRNQVDERLLTVAIGVGVGIALAIIGYLLHWISS*
Ga0137369_104638383	3300012355	Vadose Zone Soil	MPNLKGMNVEALMRLRNQVDERHLAVAIGVGGAIALTIIGYLL
Ga0137371_106316472	3300012356	Vadose Zone Soil	MNVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISS*
Ga0137384_101628362	3300012357	Vadose Zone Soil	MPNPKGINIEALMKLRDQVDERVLFVAIGLGVGIALTIIGYLLHLISA*
Ga0137384_103439913	3300012357	Vadose Zone Soil	MPNLKGMNVEALMNLRDQVVEWLPTVGIGVVVGIALAIIGYLLHLI*
Ga0137384_106705862	3300012357	Vadose Zone Soil	MPNLKGMNVEALMRLRNQVDERHLAVAIGVGVGIALTISGYLLHLISS*
Ga0137368_105079341	3300012358	Vadose Zone Soil	MANLKGINVEPLMKLLNQVDERLLAVAIGVGVAIALAIIGYLLHWISS*
Ga0137368_106931351	3300012358	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLTVAIGVGVGIALAIIGYLLH
Ga0137385_110002851	3300012359	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLTVAIGVGVGIALAIIGYLLGLIGS*
Ga0137375_113336662	3300012360	Vadose Zone Soil	LRRRSIMPNLKGMNVEALMRLRNQVDERHLAVAIGVGGAIALTIIGYLLHLIST*
Ga0137360_104315801	3300012361	Vadose Zone Soil	MPSLKGMNVEALMKLRDQVDERVFFVAIGLGVGIALAIIGYLLH
Ga0137360_108382721	3300012361	Vadose Zone Soil	MTINLKGIEALMKHEGFVTVAIGLGVGIALAIIGYLLGWISS*
Ga0137360_109652231	3300012361	Vadose Zone Soil	MNVEALMKLRNQVDERVLFVAIGLGVGIALAIIGYLLHWISS*
Ga0137360_116993331	3300012361	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLGVAIGVGVGIALAIIGYLLHLISS*
Ga0137361_103089612	3300012362	Vadose Zone Soil	MPSLKGMNVEALMKLRDQVDERVFFVAIGLGVGIALAIIGYLLHLISS*
Ga0137361_106521282	3300012362	Vadose Zone Soil	MPINLKGIEALIKHERLLTVAIGLGVGIALAIIGYLLNWIIS*
Ga0137361_106824761	3300012362	Vadose Zone Soil	MPNLKGINVEALMKLRNQVDERHLAVAIGIGVGIALTIIGYLLHWIS
Ga0137361_111781972	3300012362	Vadose Zone Soil	MANLKGMNVEALMNLRNQVDERLLTVAIGVGVAIALAIIGYLLHWINSQHFR*
Ga0137373_103923043	3300012532	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLTVAIGVGVGIVLAIIGYLLHWISS*
Ga0137358_103082123	3300012582	Vadose Zone Soil	MNVEALMKLRNQVDERLLAVAIGVGGAIVLAIIGYLLHLISA*
Ga0137396_103165641	3300012918	Vadose Zone Soil	MPNLKGMNLEALMKLRNQVDERLLAVAIGVGGAIVLAIIGYLLHLISA*
Ga0137359_102137883	3300012923	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLAVAIGVGGAIVLAIIGYLLHLISA*
Ga0137359_105988392	3300012923	Vadose Zone Soil	MNVEALMKLRDQVDERVLFVAIGLGVGIALAIIGYLLHWISA*
Ga0137413_101605232	3300012924	Vadose Zone Soil	MMQSLKGMNIEALMKLRNQVDERHLSVAIGVGGAIALAIIGYLLQWISS*
Ga0137404_105389381	3300012929	Vadose Zone Soil	MNVEALMKLRNQVDEKFLAGAIGVGGAIVLAIIGYLLHWISS*
Ga0164303_104725692	3300012957	Soil	MPNLKGMNVEALMKLRNQVDERLLFVAIGLGVGIALAIIGYLLHLISS*
Ga0164308_107485121	3300012985	Soil	MKLRNQVDESLLTVAIGVGVAIALAIIGYLLHWISS*
Ga0164306_107880432	3300012988	Soil	LKGIEALIKHERLLTVAIGLGVGIALAIIGYLLNWISS*
Ga0137403_101181975	3300015264	Vadose Zone Soil	TMTINLKGIEALMKHERFLPVVIGLGVGIALAIIGYLLHWISS*
Ga0132255_1025361201	3300015374	Arabidopsis Rhizosphere	MPNLKGVNVEALMKLRNQVDERLLFVAIGLGVGIALAIIGYLLHWISS*
Ga0184605_103143632	3300018027	Groundwater Sediment	MPNLKGMNIEALMKLRNQVDERHLSVAIGVGVAIALAIIGYLLQWISS
Ga0184608_101368972	3300018028	Groundwater Sediment	MPNLKGMNIEALMKLRNQVDERHLSVAIGVGGAIALAIIGYLLHWISS
Ga0184621_102481402	3300018054	Groundwater Sediment	MPNLKGMNIEALMKLRNQVDERHLSVAIGVGVEIALAIIGYLLHWISS
Ga0190270_105300622	3300018469	Soil	MANLKGMNIEPLMKLRNQVDERHLSVAIGVGGAIALAIIGYLLHWISS
Ga0190271_127037072	3300018481	Soil	MPNLKGMNIEALMKLRNQVDERHLSVAIGVGGAIALAIIGYLLQWISS
Ga0210381_103938632	3300021078	Groundwater Sediment	MPNLKGMNVEALMKLRNQVDERHLSVAIGVGGAIALAIIGYLLHWISS
Ga0222622_113811811	3300022756	Groundwater Sediment	MPSLKGMNIEALMKLRNQVDERHLSVAIGVGGAIALAIIGYLLQWISS
Ga0207684_101369222	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPNLKGMNVEALMKLRNQIDEWGVTVAIGVGVGIALAIIGYLLHLI
Ga0207684_104361672	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPTLKGMNVEALMKLRNQVDEWLPTVAIELGVGIALAIIGYLLHWISA
Ga0207684_112984202	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	IMTINLRGIEALIKHERFVTVAIGLGVGIALAIIGYVLGWISA
Ga0207646_114975781	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VEALMNLRNQVDERLLFVAIGLGVGIALAIIGYLLHWISS
Ga0209240_11029672	3300026304	Grasslands Soil	MANLKGMNVEALMNLRNQVDERLLTVAIGVGVAIALAIIGYLLHWINSQHFR
Ga0209239_10021063	3300026310	Grasslands Soil	MPNVKGMNVQALMKLQVDERLLAVAIGVGGAIALAIIGYLLHWISS
Ga0209239_11769672	3300026310	Grasslands Soil	MPNLKGMNVEALLKLRNQVDERLLFVAIGLGVGIALAII
Ga0209647_11222962	3300026319	Grasslands Soil	MIINLKGIEALIKHERLLTVAIGLGVGIALAIIGYLLHLISA
Ga0209647_11227062	3300026319	Grasslands Soil	MPNLKGMNVEALMKLRNQVDERLLFVAIGLGVGIALAIIGYLLHWISS
Ga0257153_10066396	3300026490	Soil	MPSLKGMNVEALMKLRNQVDERLLAVAIGVGGAIFLAIIGYLLHLISA
Ga0209648_101115534	3300026551	Grasslands Soil	MPNLTGMNVEALMKLRDQVDERVLFVAIGLGVGIALAIIGYLLHWISA
Ga0209648_103163151	3300026551	Grasslands Soil	MANLKGMNVEALMNLRNQVDERLLTVAIGVGVAIAL
Ga0209689_10281681	3300027748	Soil	MPNLKGMNVEALMKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISS
Ga0209488_101994252	3300027903	Vadose Zone Soil	MPNLKGMNVEALMKLRNQVDERLLAVAIGVGGAIVLAIIGYLLHLISA
Ga0209488_108587832	3300027903	Vadose Zone Soil	MKLRDQVDERLVFAAIGVGVGIALAIIGYLLGWISS
Ga0307295_101698291	3300028708	Soil	MPNLKGMNVEALMKLRNQVDERHLSVAIGVGGAIALAIIGYLLQWISS
Ga0307311_101569361	3300028716	Soil	IRALRRSIMPNLKGMNVEALMKLRNQVDERHLSVAIGVGGAIALAIIGYLLHWISS
Ga0307280_103529563	3300028768	Soil	MPSLKGMNIEALMKLRNQVDERHLAVAIGVDVAIALAIIGYLLQWISS
Ga0307282_101044901	3300028784	Soil	PNLKGMNIEALMKLRNQVDERHLSVAIGVGVAIALAIIGYLLQWISS
Ga0307292_100983121	3300028811	Soil	EALMKLRNQVDERHLSVAIGVGGAIALAIIGYLLHWISS
Ga0307278_100042982	3300028878	Soil	MKLRNQVDERLLAVAIGVGVGIALAIIGYLLHWISS
Ga0307278_103155711	3300028878	Soil	MPNLKGINVEALMNLRNQIDERHLALAIGVGVGIALAIIGYLLHWISS
Ga0307304_101028023	3300028885	Soil	VEIIMPSLKGMNIEALMKLRNQVDERHLSVAIGVGGAIALAIIGYLLQWISS
Ga0307471_1010170882	3300032180	Hardwood Forest Soil	MSSPSLKGMNVEALMKLRDQVDERVFFVAIGLGVGIALAIIGYLLHWISS
Ga0247830_104614171	3300033551	Soil	GMNIEALMKLRNQVDERHLGVAIGVGVAIALTIIGYLLQWISS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075894

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences