Scaffold Ga0190272

Basic Information
Taxon OID	3300018429 Open in IMG/M
Scaffold ID	Ga0190272_10000002 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018429 Open in IMG/M

Scaffold ID

Ga0190272_10000002 Open in IMG/M

Source Dataset Name

Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	272849
Total Scaffold Genes	243 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	141 (58.02%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

272849

Total Scaffold Genes

243 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

141 (58.02%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.4668	Long. (^o)	-109.6253	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.4668

Long. (^o)

-109.6253

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F041974	Metagenome / Metatranscriptome	159	Y
F081525	Metagenome	114	Y
F084700	Metagenome / Metatranscriptome	112	Y
F101835	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190272_1000000210	F002324	GGAGG	MGEIRLFQICYEGDLTVEVSHVLRRLGADPNFDQSWQVFLPEGRHSAPLVRYLRAHLSGDPRVLVACTQFTRERDFLLVRHSMTPGADYSELHDALARLGTVVELPFESTFVIQSEDRTDVQTLGAALGELCPDESLMVTGISHDWAYCNSGDSRMFVADALEEAQFRSF
Ga0190272_10000002182	F041974	N/A	MNGLFIGLIVVFFGFVILMAVWSRWRRQMGGGFGPTELSDGHMTTTPTGYPEEMKGEGKTISPVDNKAAKM
Ga0190272_1000000219	F101835	AGAAGG	MTACRFERDVLRAAREDRWTDSLREHLTGCDDCIATASVAPWMTRFARISDREHILPDPQIVWLKAKLLQGTADIARVSRPMNFAQIMAYFVVAGGWAAMLTWKWEAVQTWLRGFTPTGIVQNVARGETLSLSFFALVIVLASTTAMLALHTIMAEE
Ga0190272_1000000247	F084700	N/A	VNEKVSYEIDATTAIHLPMSERVLDKLADILFATDEILGMVRPDEERMPDPSMASIETSMQSVYDQVNELMKRLSD
Ga0190272_1000000281	F081525	GGCGG	MKQISLATLLALALSAHDASAACVNRFMVRWERPRQIVTLLTGKLTFQEAQALAEAISKKTAPPLEWVREDGKTMARQFGDLKVVRPMPVGCDGKASGVVMVVSFGSPSTPAKKMFVKLNADTTVAFEEQN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190272_10000002

Overview

Ecosystem & Geography

Associated Families

Sequences