Scaffold Ga0187802_10001150

Overview

Basic Information

• Taxon OID: 3300017822
• Scaffold ID: Ga0187802_10001150
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6992
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021166	Metagenome / Metatranscriptome	220	Y
F095899	Metagenome / Metatranscriptome	105	Y
F097854	Metagenome / Metatranscriptome	104	Y
F098087	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187802_100011502	F097854	N/A	MRRLMNFIVSVGLICAGLYVLYEELFVRYSGIHGRYRPFGVGLALIGCGVVWLGFYVVGEIVLKRLSREE
Ga0187802_100011505	F021166	GGA	MMTVTQTTRLLAWVIVGLIVLGILLYLFGPAALRTDELIVIGLLIIGLIWFQVWLRRRGQ
Ga0187802_100011506	F095899	N/A	MGPRLAVGLFAAGLFLLTAASAWAFSRETVFPDGGNYSFGDPDKQPTTSDNHSSSQGSRPFGSSGPVVQFGVQQGPTFGQSNRYNTPDPYYRSLKGN
Ga0187802_100011509	F098087	AGG	MDALSLREKAALCLRIASQLSWNNPSRLQLTDLADRLDRQAKEIELQNHPMQEDGMAAAGLIRP