Metagenome / Metatranscriptome Family F098087

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098087
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	66 residues
Representative Sequence	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHRMQEDGMAAAGSVRP
Number of Associated Samples	80
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.23 %
% of genes near scaffold ends (potentially truncated)	30.77 %
% of genes from short scaffolds (< 2000 bps)	83.65 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.154 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.192 % of family members)
Environment Ontology (ENVO)	Unclassified (39.423 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.26% β-sheet: 0.00% Coil/Unstructured: 46.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF05128	DUF697	22.12
PF01656	CbiA	2.88
PF14659	Phage_int_SAM_3	0.96
PF04134	DCC1-like	0.96
PF04392	ABC_sub_bind	0.96
PF12973	Cupin_7	0.96
PF00589	Phage_integrase	0.96
PF07120	DUF1376	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3768	Uncharacterized membrane protein YcjF, UPF0283 family	Function unknown [S]	22.12
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.96
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.96
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.15 %
Unclassified	root	N/A	28.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.15 %
Unclassified	root	N/A	28.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.15 %
Unclassified	root	N/A	28.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.35 %
Unclassified	root	N/A	28.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	59.62 %
Unclassified	root	N/A	28.85 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.96 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	56.73 %
Unclassified	root	N/A	28.85 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.96 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	47.12 %
Unclassified	root	N/A	28.85 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.92 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.96 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	47.12 %
Unclassified	root	N/A	28.85 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.92 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	46.15 %
Unclassified	root	N/A	28.85 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.92 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.96 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium sp. WSM3983	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	46.15 %
Unclassified	root	N/A	28.85 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.92 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10046442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1636	Open in IMG/M
3300004152\|Ga0062386_100711456	Not Available	825	Open in IMG/M
3300004633\|Ga0066395_10007620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3873	Open in IMG/M
3300005179\|Ga0066684_10041380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	2589	Open in IMG/M
3300005332\|Ga0066388_100242321	All Organisms → cellular organisms → Bacteria	2440	Open in IMG/M
3300005332\|Ga0066388_100498888	All Organisms → cellular organisms → Bacteria	1853	Open in IMG/M
3300005332\|Ga0066388_102188736	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300005332\|Ga0066388_104494113	Not Available	710	Open in IMG/M
3300005363\|Ga0008090_14761101	Not Available	525	Open in IMG/M
3300005363\|Ga0008090_14998202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	856	Open in IMG/M
3300005363\|Ga0008090_15823984	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300005434\|Ga0070709_11193707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	611	Open in IMG/M
3300005435\|Ga0070714_100682801	Not Available	990	Open in IMG/M
3300005436\|Ga0070713_100167834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1964	Open in IMG/M
3300005587\|Ga0066654_10056335	All Organisms → cellular organisms → Bacteria → Proteobacteria	1756	Open in IMG/M
3300005764\|Ga0066903_104121528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	778	Open in IMG/M
3300005764\|Ga0066903_108038146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	541	Open in IMG/M
3300006028\|Ga0070717_11626686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	585	Open in IMG/M
3300006046\|Ga0066652_101028533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	781	Open in IMG/M
3300006052\|Ga0075029_100177356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1322	Open in IMG/M
3300006052\|Ga0075029_100522538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	786	Open in IMG/M
3300006059\|Ga0075017_101415751	Not Available	547	Open in IMG/M
3300006163\|Ga0070715_11038767	Not Available	513	Open in IMG/M
3300006172\|Ga0075018_10260361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	843	Open in IMG/M
3300006175\|Ga0070712_100112689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	2032	Open in IMG/M
3300006755\|Ga0079222_10367776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	981	Open in IMG/M
3300006806\|Ga0079220_11007621	Not Available	662	Open in IMG/M
3300006954\|Ga0079219_10078053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1544	Open in IMG/M
3300006954\|Ga0079219_10593989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	808	Open in IMG/M
3300010048\|Ga0126373_10049949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3713	Open in IMG/M
3300010358\|Ga0126370_10334527	Not Available	1217	Open in IMG/M
3300010358\|Ga0126370_12597305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	506	Open in IMG/M
3300010360\|Ga0126372_10443001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1201	Open in IMG/M
3300010361\|Ga0126378_10008583	All Organisms → cellular organisms → Bacteria → Proteobacteria	8215	Open in IMG/M
3300010361\|Ga0126378_10559129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1259	Open in IMG/M
3300010361\|Ga0126378_11078904	Not Available	905	Open in IMG/M
3300010361\|Ga0126378_12085008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	647	Open in IMG/M
3300010366\|Ga0126379_11190357	Not Available	868	Open in IMG/M
3300010376\|Ga0126381_100150241	All Organisms → cellular organisms → Bacteria → Proteobacteria	3057	Open in IMG/M
3300010376\|Ga0126381_101963645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	843	Open in IMG/M
3300010376\|Ga0126381_102920895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	680	Open in IMG/M
3300010376\|Ga0126381_103238065	Not Available	643	Open in IMG/M
3300010398\|Ga0126383_11520776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	759	Open in IMG/M
3300012971\|Ga0126369_11558033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	750	Open in IMG/M
3300016294\|Ga0182041_10251597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1438	Open in IMG/M
3300016371\|Ga0182034_11075429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	697	Open in IMG/M
3300016387\|Ga0182040_10027446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3279	Open in IMG/M
3300016387\|Ga0182040_10619647	Not Available	878	Open in IMG/M
3300017822\|Ga0187802_10001150	All Organisms → cellular organisms → Bacteria → Proteobacteria	6992	Open in IMG/M
3300017930\|Ga0187825_10021907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	2145	Open in IMG/M
3300017936\|Ga0187821_10431996	Not Available	543	Open in IMG/M
3300017959\|Ga0187779_10050671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	2421	Open in IMG/M
3300017974\|Ga0187777_10472966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	873	Open in IMG/M
3300017994\|Ga0187822_10000972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5600	Open in IMG/M
3300018058\|Ga0187766_10034438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2945	Open in IMG/M
3300018060\|Ga0187765_10171813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1237	Open in IMG/M
3300020150\|Ga0187768_1037830	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1062	Open in IMG/M
3300020581\|Ga0210399_10180601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1752	Open in IMG/M
3300021478\|Ga0210402_10696664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	939	Open in IMG/M
3300021560\|Ga0126371_10101714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2864	Open in IMG/M
3300021560\|Ga0126371_10326174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1666	Open in IMG/M
3300021560\|Ga0126371_11882103	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300021560\|Ga0126371_11963358	Not Available	703	Open in IMG/M
3300021560\|Ga0126371_13258409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	549	Open in IMG/M
3300021560\|Ga0126371_13311905	Not Available	544	Open in IMG/M
3300025915\|Ga0207693_10016533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5896	Open in IMG/M
3300026330\|Ga0209473_1063895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1577	Open in IMG/M
3300026824\|Ga0207723_113023	Not Available	646	Open in IMG/M
3300027042\|Ga0207766_1037114	Not Available	546	Open in IMG/M
3300027070\|Ga0208365_1002362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	2137	Open in IMG/M
3300027090\|Ga0208604_1016195	Not Available	708	Open in IMG/M
3300027765\|Ga0209073_10028125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1720	Open in IMG/M
3300027765\|Ga0209073_10413159	Not Available	555	Open in IMG/M
3300027824\|Ga0209040_10275325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	832	Open in IMG/M
3300027898\|Ga0209067_10189582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1103	Open in IMG/M
3300027910\|Ga0209583_10279244	Not Available	749	Open in IMG/M
3300031546\|Ga0318538_10131698	All Organisms → cellular organisms → Bacteria → Proteobacteria	1312	Open in IMG/M
3300031546\|Ga0318538_10816721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	506	Open in IMG/M
3300031564\|Ga0318573_10504851	Not Available	651	Open in IMG/M
3300031679\|Ga0318561_10468630	Not Available	693	Open in IMG/M
3300031681\|Ga0318572_10487493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	734	Open in IMG/M
3300031715\|Ga0307476_10771143	Not Available	712	Open in IMG/M
3300031718\|Ga0307474_10690285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	806	Open in IMG/M
3300031719\|Ga0306917_10298152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1244	Open in IMG/M
3300031744\|Ga0306918_11137054	Not Available	604	Open in IMG/M
3300031747\|Ga0318502_10108937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1544	Open in IMG/M
3300031765\|Ga0318554_10071954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1917	Open in IMG/M
3300031770\|Ga0318521_10554292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	693	Open in IMG/M
3300031798\|Ga0318523_10427634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	657	Open in IMG/M
3300031805\|Ga0318497_10541230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	653	Open in IMG/M
3300031819\|Ga0318568_10971910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	525	Open in IMG/M
3300031820\|Ga0307473_10990501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	613	Open in IMG/M
3300031859\|Ga0318527_10276323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	715	Open in IMG/M
3300031879\|Ga0306919_10480836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	957	Open in IMG/M
3300031880\|Ga0318544_10303967	Not Available	619	Open in IMG/M
3300031896\|Ga0318551_10382698	Not Available	799	Open in IMG/M
3300031942\|Ga0310916_11233153	Not Available	617	Open in IMG/M
3300031947\|Ga0310909_10409852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	1138	Open in IMG/M
3300032044\|Ga0318558_10649746	Not Available	527	Open in IMG/M
3300032059\|Ga0318533_10128589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1777	Open in IMG/M
3300032064\|Ga0318510_10213146	Not Available	784	Open in IMG/M
3300032076\|Ga0306924_10393720	Not Available	1586	Open in IMG/M
3300032261\|Ga0306920_100035853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7130	Open in IMG/M
3300032261\|Ga0306920_100921601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1276	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.46%
Aquatic	Environmental → Aquatic	11.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.46%
Freshwater	Environmental → Aquatic → Freshwater	5.77%
Sediment	Environmental → Aquatic → Sediment	5.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.38%
Loam	Environmental → Terrestrial → Soil → Loam	18.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.81%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.88%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	2.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026824	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 (SPAdes)	Environmental	Open in IMG/M
3300027042	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_100464425	3300003505	Forest Soil	MDTLSLREKAALCLRIASQLSWNNPSRLQLADLADRLDRQAKDIESQNHPTQEGGIVPADAGVVRS*
Ga0062386_1007114562	3300004152	Bog Forest Soil	MDTLSLREKAALCLRIASRLSWNNPSRLQLTDLADRFDRQAKEIELRNHPTQEDDMGEGLIRP*
Ga0066395_100076206	3300004633	Tropical Forest Soil	MDTLSLREKAALCLRIASRLSWNNPGRLQLTDLAERLDRQAKEIELQNHPAQGGGMAAAGSAQS*
Ga0066684_100413802	3300005179	Soil	MDTLKLREKAALCLRIAARLSWNNPTRLQLTDLADRFDRQAKEIETQNHAAQPAGIATANGAVKS*
Ga0066388_1002423213	3300005332	Tropical Forest Soil	VVGHPMDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHRSQQAGIAAVGTARS*
Ga0066388_1004988883	3300005332	Tropical Forest Soil	MNALNLREKAALCLRIASRLSWSNPTRLQLTDLADRFDRQAKEIELQHDRAQDAGIATASAAPVRP*
Ga0066388_1021887362	3300005332	Tropical Forest Soil	VDILRLRDKAALSLRIAGRLSWNNPSRLQLTDLADRLERQAKEIEAQCRRAQEDGILAAGARLSRS*
Ga0066388_1044941131	3300005332	Tropical Forest Soil	MDTLSLREKAALCLRIASRLSWNNPGRLQLTDLAERLDRQAKEIELQNHPAQESGMAAAGLVRS*
Ga0008090_147611011	3300005363	Tropical Rainforest Soil	MNSSSLREKAVLCLRIAQQLSWNNPSRLQLADLAGRFERQAKEIEAHDDPAREDSVLASAVRLT
Ga0008090_149982023	3300005363	Tropical Rainforest Soil	MNALNLREKAALCLRIASRLSWSNPTRLQLTDLADRFDRQAKEIELQNQPSQDAA*
Ga0008090_158239842	3300005363	Tropical Rainforest Soil	MNALNLREKAALCLRIASRLSWSNPTRLQLTDLADRFDREAKEIELQNDRAQGAGIARANAALRP*
Ga0070709_111937071	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	TVSWAIMDIFRLREKAALCLRIASRLSWNNPSRLQLADLADHLERQAKEIESQNQPAQQDGMFAAGARSRRS*
Ga0070714_1006828011	3300005435	Agricultural Soil	MDILRLREKAALCLRIAGRLSWNNPSRLQLTDLADHLERQAKEIESQNQPAQQDGMFAAGAGVSRS*
Ga0070713_1001678342	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDTLSLREKAALCLRIASRLSWNNPSRLQLTDLADRLDRQAKEIELQNHRPQEDGMAAADPARP*
Ga0066654_100563351	3300005587	Soil	MDTLKLREKAALCLRIAARLSWNNPTRLQLTDLADRFDRQAKEIETQNHAAQ
Ga0066903_1041215282	3300005764	Tropical Forest Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNQPTQERGVAAAGAGVVRS*
Ga0066903_1080381461	3300005764	Tropical Forest Soil	MDILRLRDKAALCLRIASRLSWNNPSRLQLADLADRLERQAKEIESQNQPAQQDGMFVADARFGRPKLPSVT*
Ga0070717_116266861	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TRTVSWAIMDIFRLREKAALCLRIASRLSWNNPSRLQLADLADHLERQAKEIESQNQPAQQDGMFAAGARLRRS*
Ga0066652_1010285331	3300006046	Soil	MDTLKLREKAALCLRIAARLSWNNPTRLQLTDLADRFDRQAKEIETQKHAAQPAGIAMANGAVKS*
Ga0075029_1001773562	3300006052	Watersheds	MDTLSLREKAALCLRIASRLSWNNPSRLQLTDLADRFDRQAKEIELRNHPTQEDDIGEGLIRP*
Ga0075029_1005225382	3300006052	Watersheds	TMDTLSLREKAALCLRIASRLSWNNPSRLQLADLADRLDRQAKDIESQNHPTQEGGIVPADAGVVRS*
Ga0075017_1014157512	3300006059	Watersheds	MDTLSLREKAALCLRIASRLSWNNPSRLQLADLADRLDRQAKDIESQNHPTQEGGIVPADAGMVRS*
Ga0070715_110387672	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MDTLSLRKKAALCLRIASRLSWNNPSRLQLTDLADRLDRQAKEIELKNHRPQQGGMAAAGSARS*
Ga0075018_102603611	3300006172	Watersheds	MDTLSLREKAALCLRIASRLSWNNPSRLQLADLADRLDRQAKDIESQNHPTQEGGIVPADAGVVRS*
Ga0070712_1001126891	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MDTLSLREKAALCLRIASRLSWNNPSRLQLTDLADRLDRQAKEIELKNHRPQQGGMAAAGSARS*
Ga0079222_103677762	3300006755	Agricultural Soil	MDTLKLREKAALCLRIAARLSWNNPTRLQLTDLADRFDRQAKEIESQNHAAQPAGIATANGAVRS*
Ga0079220_110076212	3300006806	Agricultural Soil	MNTLSLREKAALCLRIARRLSWNNPSRLQLADLADRLDRQAKEIEAQDHPAQQLASALGGTKS*
Ga0079219_100780534	3300006954	Agricultural Soil	MDTLSLREKAALCLRIASRLSWNNPSLLQLTDLADRLDRQAKEIELQNHRPQEDGMAAADPARP*
Ga0079219_105939892	3300006954	Agricultural Soil	MNTLSLREKAALCLRIARRLSCNNPSRLQLADLADRFDRQAKEIEAQDHPAQQLASALGGTKS*
Ga0126373_100499499	3300010048	Tropical Forest Soil	MDTLSLREKAALCLRVARRLSWSNPSRLQLTDLAGRFEQQAREIELRNDRAQRDGLAAAGSSRT*
Ga0126370_103345273	3300010358	Tropical Forest Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHPRQERGIAAAGSGIVRS*
Ga0126370_125973052	3300010358	Tropical Forest Soil	SVRIVVGPVMNALNLREKAALCLRIASRLSWSNPTRLQLTDLADRFDREAKEIELQNDRAQGAGIARANAAAVRP*
Ga0126372_104430012	3300010360	Tropical Forest Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHSTQERGIAAAGSGIVRS*
Ga0126378_100085836	3300010361	Tropical Forest Soil	MDTLSLREKAALCLRIASRLSWNNPGRLQLTDLAERLDRQAKEIELQNHPAQGGGMAAAGSVQS*
Ga0126378_105591293	3300010361	Tropical Forest Soil	MDTLSLKEKAALCLRIARGLSWNNPSRMQLADLADRLDRQAREIELQNNRAQDGGIVTADTGTIRS*
Ga0126378_110789042	3300010361	Tropical Forest Soil	MNSSSLREKAVLCLRIAQQLSWNNPSRLQLADLAGRFERQAKEIEAQDDPAREDSVLASAVRSTKS*
Ga0126378_120850082	3300010361	Tropical Forest Soil	WWATMDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNQPTQERGVAAAGAGVVRS*
Ga0126379_111903572	3300010366	Tropical Forest Soil	MDTLSLKEKAALCLRIARGLSWNNPSRLQLADLADRLDRQAREIELQNNRAQDGGMVTADTGTIRS*
Ga0126381_1001502413	3300010376	Tropical Forest Soil	MDTLSLKEKAALCLRIARGLSWNNPSRMQLADLADRLDRQAREIELQNNCAQDGGIVTADTGTIRS*
Ga0126381_1019636452	3300010376	Tropical Forest Soil	MDTLSLREKAALCLRIASRLSWNNPGRLQLTDLAERLDRQAKGIELQNHPAQGGGMAAAGSAQS*
Ga0126381_1029208952	3300010376	Tropical Forest Soil	MNALNLRERAALCLRIASRLSWSNPTRLQLTDLADRFDRQAKEIELQNDRAQGAGIARANAATLRP*
Ga0126381_1032380651	3300010376	Tropical Forest Soil	MDILSLKEKAALCLRIASRLSWNNPSRLQLTDLADRLDRQAKEIELQNHRAHDSTAAWDTEIIRS*
Ga0126383_115207761	3300010398	Tropical Forest Soil	MNALNLREKAALCLRIASRLSWSNPTRLQLTDLADRFDRQAKEIELQNGRAQGAGIARANAATLRP*
Ga0126369_115580332	3300012971	Tropical Forest Soil	MNALNLREKAALCLRIASRLSWSNPTRLQLTDLADRFDRQAKEIELQNDRAQGAGIARANAAAVRP*
Ga0182041_102515971	3300016294	Soil	LREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTQEGGMATAGSARP
Ga0182034_110754292	3300016371	Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTPEGGMATAGSGPTLVARGRAAGIR
Ga0182040_100274465	3300016387	Soil	MGTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTQEGGMATAGSARP
Ga0182040_106196471	3300016387	Soil	TLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTREGGMATAGSGPTLVARGRAAGIR
Ga0187802_100011509	3300017822	Freshwater Sediment	MDALSLREKAALCLRIASQLSWNNPSRLQLTDLADRLDRQAKEIELQNHPMQEDGMAAAGLIRP
Ga0187825_100219074	3300017930	Freshwater Sediment	MDTLSLREKAALCLRIASRLSWHNPGRLQLTDLADRLDRQAKEIELQNHRAQQNGMAAATARGRFASAS
Ga0187821_104319961	3300017936	Freshwater Sediment	MDTLSLREKAALCLRIASRLSWHNPGRLQLTDLADRLDRQAKEIELQNHRAQQNGMAAATSARP
Ga0187779_100506714	3300017959	Tropical Peatland	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHRTQENGMAAAGFVRP
Ga0187777_104729661	3300017974	Tropical Peatland	MDTLSLREKAALCLRIANGLSWNNPSRSQLTDLADRLDRQAKEIELQNHQMQEDGLAAVGSVRP
Ga0187822_1000097212	3300017994	Freshwater Sediment	TMDALSLREKAALCLRIASQLSWNNPSRLQLTDLADRLDRQAKEIELQNHPMQEDGMAAAGLIRP
Ga0187766_100344383	3300018058	Tropical Peatland	MDPLNLREKAALCLRIARRLSWNNPSRLQLADLADRFNRQAKEIESQDPQRDGLLAGAVGFNKT
Ga0187765_101718133	3300018060	Tropical Peatland	MNALNLREKAVLCLRIASRLSWSNPTRLQLTDLADRFDRQAKEIELQNHPAQEAGVATANAAVVRP
Ga0187768_10378301	3300020150	Tropical Peatland	MDTLSLREKAALCLRIASGLSWNNPSRSQLTDLADRLDRQAKEIELQNHQMQEDGLAAV
Ga0210399_101806015	3300020581	Soil	VGHTMDTLSLRQKAALCLRIASRLSWNNPSRLQLTDLADRLDRQAKEIELKNHRPQQDGMAAAGTARS
Ga0210402_106966642	3300021478	Soil	MDTLSLREKAALCLRIASQLSWNNPSRLQLADLADRLDRQAKDIESQNHPTQEGGIVPADAGVVRS
Ga0126371_101017145	3300021560	Tropical Forest Soil	MDTLSLREKAALCLRIASRLSWNNPGRLQLTDLAERLDRQAKEIELQNHPAQGGGMAAAGSVQS
Ga0126371_103261741	3300021560	Tropical Forest Soil	MNALNLREKAALCLRIASRLSCSNPTRLQLTDLADRFDRQAKEIELQNDRAQGAGNAKSNAAAVRP
Ga0126371_118821032	3300021560	Tropical Forest Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHPRQERGIAAAG
Ga0126371_119633581	3300021560	Tropical Forest Soil	MNALNLRERAALCLRIASRLSWSNPTRLQLTDLADRFDRQAKEIELQNDRAQGAGIARANAATLRP
Ga0126371_132584091	3300021560	Tropical Forest Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNQPTQERGVAAAGAGVVRS
Ga0126371_133119051	3300021560	Tropical Forest Soil	VNALNLREKAALCLRIASRLSWSNPTRLQLTDLADRFDRQAKEIELQHDRAQDAGIATASAAPVRP
Ga0207693_100165338	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDTLSLREKAALCLRIASRLSWNNPSRLQLTDLADRLDRQAKEIELKNHRPQQGGMAAAGSPDPRNVLARR
Ga0209473_10638951	3300026330	Soil	MDTLKLREKAALCLRIAARLSWNNPTRLQLTDLADRFDRQAKEIETQNHAAQPAGIATANGAVKS
Ga0207723_1130232	3300026824	Tropical Forest Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHRMQEDGMAAAGSVRP
Ga0207766_10371141	3300027042	Tropical Forest Soil	LREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTREGGMATAGSGPTLVARGRAAGIR
Ga0208365_10023622	3300027070	Forest Soil	MDTLSLREKAALCLRIASRLSWNNPSRLQLTDLADRLDRQAKEIELKNHRPQQDGMAAAGTARP
Ga0208604_10161952	3300027090	Forest Soil	MDTLSLREKAALCLRIASRLSWNNPSRLQLTDLADRLDRQAKEIELKNHRPQQDGMAAAGTARS
Ga0209073_100281254	3300027765	Agricultural Soil	MDTLKLREKAALCLRIAARLSWNNPTRLQLTDLADRFDRQAKEIESQNHAAQPAGIATANGAVRS
Ga0209073_104131592	3300027765	Agricultural Soil	MNTLSLREKAALCLRIARRLSWNNPSRLQLADLADRLDRQAKEIEAQDHPAQQLASALGGTKS
Ga0209040_102753252	3300027824	Bog Forest Soil	LSLREKAALCLRIASRLSWNNPSRLQLTDLADRFDRQAKEIELRNHPTQEDDMGEGLIRP
Ga0209067_101895822	3300027898	Watersheds	MDTLSLREKAALCLRIASRLSWNNPSRLQLTDLADRFDRQAKEIELRNHPTQEDDIGEGLIRP
Ga0209583_102792442	3300027910	Watersheds	MDTLSLREKAALCLRIASQLSWNNPSRLQLADLADRLDRQAKDIESQNHPTQEGGIVPADAGVV
Ga0318538_101316982	3300031546	Soil	MDTLSLREKAALCLRIASRLSWNNPGRLQLTDLAERLDRQAKEIELQNHPAQESGMAAAGLVRS
Ga0318538_108167211	3300031546	Soil	LSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTQEGGMATAGSAR
Ga0318573_105048511	3300031564	Soil	ALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTREGGMATAGSGPTLVARGRAAGIR
Ga0318561_104686302	3300031679	Soil	MNALNLREKAALCLRIAKRLSWSNPTRLQLTDLAERFDRQAREIELQDHPAQDAGIATANAAVVRP
Ga0318572_104874932	3300031681	Soil	GRPAMDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTREGGMATAGSGPTLVARGRAAGIR
Ga0307476_107711432	3300031715	Hardwood Forest Soil	MDTLSLREKAALCLRIASRLSWNNPSRLQLADLADRLDRQAKDIESQNHPTQEGGIVPADAGVVRS
Ga0307474_106902852	3300031718	Hardwood Forest Soil	MDTLSLREKAALCLRIASRLSRNNPSRLQLTDLADRLDRQAKEIELKNHRPQQDGMAAAGTARP
Ga0306917_102981522	3300031719	Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTQEGGMATAGSARP
Ga0306918_111370541	3300031744	Soil	MNALNLREKAALCLRIAKRLSWSNPTRLQLTDLAERFDRQAREIELQDHPAQDAGIATAN
Ga0318502_101089374	3300031747	Soil	VYSRPALSGRRAMDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTQEGGMATAGSARP
Ga0318554_100719543	3300031765	Soil	MDTLSLREKGALYLRIASRLSWNNPGRLQLTDLAERLDRQAKEIELQNHPAQESGMAAAGLVRS
Ga0318521_105542922	3300031770	Soil	VVGLMDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTQEGGMATAGSARP
Ga0318523_104276342	3300031798	Soil	ALSGRRAMDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTPEGGMATAGSGPTLVARGRAAGIR
Ga0318497_105412301	3300031805	Soil	TLSLREKAALCLRIASGLSWNNPSRLQLTNLADRLDRQAKEIELQNHQTREGGMATAGSGPTLVARGRAAGIR
Ga0318568_109719102	3300031819	Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTREDGMATAGSGPTLVARGRAAGIR
Ga0307473_109905011	3300031820	Hardwood Forest Soil	REKAALCLRIASRLSRNNPSRLQLTDLADRLDRQAKEIELKNHRPQQDGMAAAGTARP
Ga0318527_102763231	3300031859	Soil	ATMDTLSLREKAALCLRIASRLSWNNPGRLQLTDLAERLDRQAKEIELQNHPAQESGMAAAGLVRS
Ga0306919_104808363	3300031879	Soil	MNALNLREKAALCLRIAKRLSWSNPTRLQLTDLAERFDRQAREIELQDHPAQAAGIATANAAVVRP
Ga0318544_103039671	3300031880	Soil	TMDTLSLREKAALCLRIASRLSWNNPGRLQLTDLAERLDRQAKEIELQNHPAQESGMAAAGLVRS
Ga0318551_103826981	3300031896	Soil	SRPALSSRPAMDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTREGGMATAGSGPTLVARGRAAGIR
Ga0310916_112331531	3300031942	Soil	ESGVYSRPALSSRPAMDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTREGGMATAGSGPTLVARGRAAGIR
Ga0310909_104098522	3300031947	Soil	MGTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTREGGMATAGSGPTLVARGRAAGIR
Ga0318558_106497461	3300032044	Soil	DTLSLREKAALCLRVARRLSWSNPSRLQLTDLAGRFEQQAREIELRNDLAQRDGLAAAGSSRT
Ga0318533_101285893	3300032059	Soil	MDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTQEGGMA
Ga0318510_102131462	3300032064	Soil	YLFTRRTEWWTTMDTLSLREKAALCLRIASRLSWNNPGRLQLTDLAERLDRQAKEIELQNHPAQESGMAAAGLVRS
Ga0306924_103937201	3300032076	Soil	RPAMDTLSLREKAALCLRIASGLSWNNPSRLQLTDLADRLDRQAKEIELQNHQTREGGMATAGSGPTLVARGRAAGIR
Ga0306920_1000358535	3300032261	Soil	MDTLSLREKAALCLRVARRLSWSNPSRLQLTDLAGRFEQQAREIELRNDLAQRDGLAAAGSSRT
Ga0306920_1009216012	3300032261	Soil	MDTLSLREKGALYLRIASRLSWNNQGRLRLTDLAERLDRQAKEIELQNHPAQESGMAAAGLVRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098087

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences