Scaffold Ga0181398

Basic Information
Taxon OID	3300017725 Open in IMG/M
Scaffold ID	Ga0181398_1000040 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34051
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (25.32%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

34051

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (25.32%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042077	Metagenome	159	Y
F051549	Metagenome	144	Y
F056970	Metagenome	137	Y
F072853	Metagenome	121	Y
F086303	Metagenome	111	Y
F089526	Metagenome	109	Y
F106107	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181398_100004025	F106107	N/A	MTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIHDIEDKGYEEVEEAYVQDAFNIAFNWTPDPYGKS
Ga0181398_100004028	F051549	AGG	MKYRIRYTDKTDYTQEIIVDAPNVREAIDDALEQLPDNIVILSALQANL
Ga0181398_100004032	F072853	N/A	MAASVSNVYDVLECVKNKVEELCVAEEVSPLLVWLLLRQQADYQLLLLQDSNK
Ga0181398_100004037	F089526	AGG	MNLNKEQLNDVRHAVAYYMYHHVSIQNPRYNDYEVILQLLSDTKEEAK
Ga0181398_100004052	F042077	N/A	MEQSYCLISSFNLERIDEMLVRAINICGSPRPFSETTEEDDCTASYAGAYGYSYQTLKSIKEYIDTARPYDPSITGVPF
Ga0181398_100004064	F086303	N/A	MKTLISALVLSAASVLPVSAGIHDFNPTNAAPVPTRTKAQVGQGQCVSTRDGSQLCYLKTSSSNFSIAIRDVDYPNATEVAHINCSTGRWGAFGDLPKATLELYLGQFCPTYG
Ga0181398_10000407	F056970	N/A	MNRLQKLQECLAIAQKHKNPDMEANIKLAIEEERKNPCDDVYPDPTDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181398_1000040

Overview

Ecosystem & Geography

Associated Families

Sequences