NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180217_1000252

Scaffold Ga0180217_1000252


Overview

Basic Information
Taxon OID3300017540 Open in IMG/M
Scaffold IDGa0180217_1000252 Open in IMG/M
Source Dataset NameEnriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C BE-Lig OP (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)100449
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (64.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050234Metagenome / Metatranscriptome145Y
F067546Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0180217_100025242F067546AGGMASVAPQRAPLSVRTEGPAIVLTLCEQLDDLTGPVLVDAVASAVATAPQRVEIDLTELLGWTDAGAQSLVRCRELCRDLPDGLHYRTGRGPGRDALLAAYR
Ga0180217_100025257F050234GGAGGVVPPWWLLIPMLEFPVLMALLDCWQRPPEHFAEGAEDRRAWLRWLLVAVLTVPVLLGYGIILGYFYAVVRRNSPASPR

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