Basic Information | |
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Taxon OID | 3300017133 Open in IMG/M |
Scaffold ID | Ga0186595_113047 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic communities from Arabian Sea in K medium with silica, 15 C, 21 psu salinity and 683 ?mol photons light - Rhizosolenia setigera CCMP 1694 (MMETSP0789) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 868 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
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Location Name | Arabian Sea | |||||||
Coordinates | Lat. (o) | 23.5643 | Long. (o) | 58.853 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F078213 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0186595_1130471 | F078213 | AGG | MWNPPAVNNMMSRNDEDSLKALGEAYKNAADNIGIKNLAPKKIEDTLRQGGTFIFKGEEPLLQHFDAKVGDNCDIESILQAIGTK |
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